Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 5' | -50.5 | NC_002687.1 | + | 54980 | 0.98 | 0.075074 |
Target: 5'- -uUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 51624 | 0.99 | 0.069236 |
Target: 5'- gGUGCauAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54240 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 51479 | 1 | 0.058845 |
Target: 5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 52425 | 1 | 0.058845 |
Target: 5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 50393 | 1 | 0.055729 |
Target: 5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acaCGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 51749 | 1 | 0.055729 |
Target: 5'- --aGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acaCGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 52504 | 1.02 | 0.042405 |
Target: 5'- gUGUGCAGCUCACUuAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAuUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 51558 | 1.05 | 0.029654 |
Target: 5'- gUGUGCAGUUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 52888 | 0.97 | 0.090584 |
Target: 5'- gUGUGUAGCUCACcAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGaUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55257 | 0.97 | 0.093034 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 157844 | 0.8 | 0.642143 |
Target: 5'- cGUGCAGUUCAgUGGGUCGUuCUGCGc -3' miRNA: 3'- aCACGUCGAGUgAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230012 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230254 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230618 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230738 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 231469 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54836 | 0.93 | 0.157195 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55176 | 0.96 | 0.100768 |
Target: 5'- gUGUGCAGCUCACUAAAUCGU-CUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 53293 | 0.97 | 0.093034 |
Target: 5'- uUGUGCAuCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUcGAGUGAUUUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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