miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 51121 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5'
10303 5' -50.5 NC_002687.1 + 52106 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5'
10303 5' -50.5 NC_002687.1 + 53336 0.7 0.987864
Target:  5'- gUGUGCAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5'
10303 5' -50.5 NC_002687.1 + 228519 0.7 0.982681
Target:  5'- -uUGCAGUUCGaUAAAUCGUGUuacguUGCAg -3'
miRNA:   3'- acACGUCGAGUgAUUUAGCACG-----ACGU- -5'
10303 5' -50.5 NC_002687.1 + 230446 0.76 0.858794
Target:  5'- --gGUAGCaCGCUGAggCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUGAUUuaGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230859 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230981 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230498 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231225 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231347 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230132 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231103 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 157844 0.8 0.642143
Target:  5'- cGUGCAGUUCAgUGGGUCGUuCUGCGc -3'
miRNA:   3'- aCACGUCGAGUgAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230383 0.81 0.611233
Target:  5'- gGUGCuGCUgugucgcaCACUAAGUCGUGUUGCGa -3'
miRNA:   3'- aCACGuCGA--------GUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54176 0.86 0.358138
Target:  5'- gGUGCguAGCUCACUAAAU-GUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAgCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 229890 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230254 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230618 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230738 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231469 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.