Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10304 | 5' | -50.5 | NC_002687.1 | + | 51121 | 0.7 | 0.989294 |
Target: 5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3' miRNA: 3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 52106 | 0.7 | 0.989294 |
Target: 5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3' miRNA: 3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 53336 | 0.7 | 0.987864 |
Target: 5'- gUGUGCAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 228519 | 0.7 | 0.982681 |
Target: 5'- -uUGCAGUUCGaUAAAUCGUGUuacguUGCAg -3' miRNA: 3'- acACGUCGAGUgAUUUAGCACG-----ACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230446 | 0.76 | 0.858794 |
Target: 5'- --gGUAGCaCGCUGAggCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUGAUUuaGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230859 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230981 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230498 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 231225 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 231347 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230132 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 231103 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 157844 | 0.8 | 0.642143 |
Target: 5'- cGUGCAGUUCAgUGGGUCGUuCUGCGc -3' miRNA: 3'- aCACGUCGAGUgAUUUAGCAcGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230383 | 0.81 | 0.611233 |
Target: 5'- gGUGCuGCUgugucgcaCACUAAGUCGUGUUGCGa -3' miRNA: 3'- aCACGuCGA--------GUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 54176 | 0.86 | 0.358138 |
Target: 5'- gGUGCguAGCUCACUAAAU-GUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAgCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 229890 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230618 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230254 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 230738 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10304 | 5' | -50.5 | NC_002687.1 | + | 231469 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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