miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10305 3' -55.2 NC_002687.1 + 224885 0.66 0.991671
Target:  5'- uACCGgaaaaUCCGGGuucgcgaUGGGUACCGAu -3'
miRNA:   3'- -UGGCaca--AGGCCUuua----GCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 145309 0.66 0.991671
Target:  5'- cGuuGUGaa-CGGcg--CGGGCACCGAg -3'
miRNA:   3'- -UggCACaagGCCuuuaGCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 21132 0.66 0.990565
Target:  5'- gACCGUcGUUggggcuaCGGAAGUUGacaucGGCACCGGc -3'
miRNA:   3'- -UGGCA-CAAg------GCCUUUAGC-----CCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 10927 0.67 0.984951
Target:  5'- cUCGUGcaCCGuGGAAU-GGGUACCGAc -3'
miRNA:   3'- uGGCACaaGGC-CUUUAgCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 245630 0.67 0.98133
Target:  5'- cUCGUGUucuuUCCGGAuaugCGGGUGuuGAu -3'
miRNA:   3'- uGGCACA----AGGCCUuua-GCCCGUggCU- -5'
10305 3' -55.2 NC_002687.1 + 299341 0.67 0.98133
Target:  5'- uCgGUGcUCCGGAGG-CGGGCGCa-- -3'
miRNA:   3'- uGgCACaAGGCCUUUaGCCCGUGgcu -5'
10305 3' -55.2 NC_002687.1 + 320286 0.67 0.98133
Target:  5'- cUCGUGUucuuUCCGGAuaugCGGGUGuuGAu -3'
miRNA:   3'- uGGCACA----AGGCCUuua-GCCCGUggCU- -5'
10305 3' -55.2 NC_002687.1 + 297651 0.67 0.979292
Target:  5'- -gCGUGUcCCGGAuccuAUCGGcGUACuCGAu -3'
miRNA:   3'- ugGCACAaGGCCUu---UAGCC-CGUG-GCU- -5'
10305 3' -55.2 NC_002687.1 + 90017 0.68 0.968618
Target:  5'- uCCGUugUCgCGGGagcaggugccguaaGAUCGGGCACUGGa -3'
miRNA:   3'- uGGCAcaAG-GCCU--------------UUAGCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 277741 0.69 0.953016
Target:  5'- cACCcccacCCGGAuAAUCGGGCACCa- -3'
miRNA:   3'- -UGGcacaaGGCCU-UUAGCCCGUGGcu -5'
10305 3' -55.2 NC_002687.1 + 277770 0.69 0.953016
Target:  5'- cACCcccacCCGGAuAAUCGGGCACCa- -3'
miRNA:   3'- -UGGcacaaGGCCU-UUAGCCCGUGGcu -5'
10305 3' -55.2 NC_002687.1 + 58030 0.69 0.940711
Target:  5'- aAUCGUcggUCCGGguGUCGGGCGCg-- -3'
miRNA:   3'- -UGGCAca-AGGCCuuUAGCCCGUGgcu -5'
10305 3' -55.2 NC_002687.1 + 292667 0.69 0.936186
Target:  5'- uGCUGUGUguauUCCGcGAGAggGGGCAgCGGu -3'
miRNA:   3'- -UGGCACA----AGGC-CUUUagCCCGUgGCU- -5'
10305 3' -55.2 NC_002687.1 + 10481 0.71 0.892292
Target:  5'- aGCCGgg-UCCGGuggcacAUCGGGUGCCGu -3'
miRNA:   3'- -UGGCacaAGGCCuu----UAGCCCGUGGCu -5'
10305 3' -55.2 NC_002687.1 + 126628 0.72 0.843184
Target:  5'- gACCaGUGcaUCCGGcAAUguucCGGGCACCGAg -3'
miRNA:   3'- -UGG-CACa-AGGCCuUUA----GCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 222217 0.73 0.826722
Target:  5'- gACCGUGagcgUCGGAuuUCGGGCggcaacgACCGAu -3'
miRNA:   3'- -UGGCACaa--GGCCUuuAGCCCG-------UGGCU- -5'
10305 3' -55.2 NC_002687.1 + 196626 0.73 0.826722
Target:  5'- gACCGUGagcgUCGGAuuUCGGGCggcaacgACCGAu -3'
miRNA:   3'- -UGGCACaa--GGCCUuuAGCCCG-------UGGCU- -5'
10305 3' -55.2 NC_002687.1 + 103084 0.73 0.80285
Target:  5'- aGCCGaUGUcgacgCCGGGAAcaacgCGGGUGCCGAc -3'
miRNA:   3'- -UGGC-ACAa----GGCCUUUa----GCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 177797 0.76 0.664872
Target:  5'- aACCGUGUUCUucaGGuacAGUgGGGUACCGAg -3'
miRNA:   3'- -UGGCACAAGG---CCu--UUAgCCCGUGGCU- -5'
10305 3' -55.2 NC_002687.1 + 58433 1.09 0.008956
Target:  5'- aACCGUGUUCCGGAAAUCGGGCACCGAg -3'
miRNA:   3'- -UGGCACAAGGCCUUUAGCCCGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.