Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10305 | 5' | -59.9 | NC_002687.1 | + | 58396 | 1.06 | 0.005183 |
Target: 5'- cAACAACGCGCCCGACACCCGGACCGAc -3' miRNA: 3'- -UUGUUGCGCGGGCUGUGGGCCUGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 257392 | 0.79 | 0.272652 |
Target: 5'- cGCGAUGUGCCCGACgcGCUCGGGCCa- -3' miRNA: 3'- uUGUUGCGCGGGCUG--UGGGCCUGGcu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 63112 | 0.77 | 0.351733 |
Target: 5'- gGACGGCGUGCUCGAUGCCaGGGCCGc -3' miRNA: 3'- -UUGUUGCGCGGGCUGUGGgCCUGGCu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 155812 | 0.73 | 0.543039 |
Target: 5'- uGGCAGCGCGcCCCGAUugCCGuGA-CGAg -3' miRNA: 3'- -UUGUUGCGC-GGGCUGugGGC-CUgGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 75700 | 0.73 | 0.561544 |
Target: 5'- aAACAuuCGUGCUCGGCGCCUGGuCCGu -3' miRNA: 3'- -UUGUu-GCGCGGGCUGUGGGCCuGGCu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 321975 | 0.73 | 0.570862 |
Target: 5'- cACAGCGCGCCUugaGGCACCU-GAUCGAa -3' miRNA: 3'- uUGUUGCGCGGG---CUGUGGGcCUGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 252594 | 0.72 | 0.617899 |
Target: 5'- aGAUcAUGCGCCCGgaugGCGuCCCGGgACCGAg -3' miRNA: 3'- -UUGuUGCGCGGGC----UGU-GGGCC-UGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 308789 | 0.7 | 0.739213 |
Target: 5'- aGGgGGCGCGCCCGcccCGCCgGGgucGCCGGg -3' miRNA: 3'- -UUgUUGCGCGGGCu--GUGGgCC---UGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 86499 | 0.69 | 0.748187 |
Target: 5'- aAAUGGCGUaGCCaUGGCACCCaugGGGCCGAu -3' miRNA: 3'- -UUGUUGCG-CGG-GCUGUGGG---CCUGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 44054 | 0.69 | 0.774557 |
Target: 5'- uGAUuGCGCGCCCGAUgACCUGGuucauCUGGg -3' miRNA: 3'- -UUGuUGCGCGGGCUG-UGGGCCu----GGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 249182 | 0.69 | 0.774557 |
Target: 5'- --gGACGCuucuuucuccGUCCGACGCCCcGGACCu- -3' miRNA: 3'- uugUUGCG----------CGGGCUGUGGG-CCUGGcu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 157164 | 0.69 | 0.791605 |
Target: 5'- -cCAGCGCGUuuCCGAUGCCCuuucGGACCu- -3' miRNA: 3'- uuGUUGCGCG--GGCUGUGGG----CCUGGcu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 148550 | 0.68 | 0.799948 |
Target: 5'- --gGACGCGCCCGGCAaguCCCuuACCGc -3' miRNA: 3'- uugUUGCGCGGGCUGU---GGGccUGGCu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 117582 | 0.68 | 0.824173 |
Target: 5'- cGAUGGCGaCGCCU-ACACCCGcGCCGGg -3' miRNA: 3'- -UUGUUGC-GCGGGcUGUGGGCcUGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 298975 | 0.68 | 0.839588 |
Target: 5'- gAGCAGCGCugcGCCCG-CcUCCGGAgcaCCGAg -3' miRNA: 3'- -UUGUUGCG---CGGGCuGuGGGCCU---GGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 106989 | 0.67 | 0.847057 |
Target: 5'- gGACAugGUGUCgGuGCuCCCGGACgGAa -3' miRNA: 3'- -UUGUugCGCGGgC-UGuGGGCCUGgCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 204819 | 0.67 | 0.847057 |
Target: 5'- gAAC-ACGCGCCCGACAauCCCuccaGCCGu -3' miRNA: 3'- -UUGuUGCGCGGGCUGU--GGGcc--UGGCu -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 112237 | 0.67 | 0.847057 |
Target: 5'- aAACuucauCGUGCUCGGCAUCCcgaGGAUCGAa -3' miRNA: 3'- -UUGuu---GCGCGGGCUGUGGG---CCUGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 37801 | 0.67 | 0.847057 |
Target: 5'- cACAACGUGCCCGAUAUgUauaACCGAg -3' miRNA: 3'- uUGUUGCGCGGGCUGUGgGcc-UGGCU- -5' |
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10305 | 5' | -59.9 | NC_002687.1 | + | 323499 | 0.67 | 0.877208 |
Target: 5'- gGACGACGCGCCggcaucucucuuuCGGCAaggugaggcgucccuCCUGGugUGAa -3' miRNA: 3'- -UUGUUGCGCGG-------------GCUGU---------------GGGCCugGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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