Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 308789 | 0.7 | 0.739213 |
|
Target: 5'- aGGgGGCGCGCCCGcccCGCCgGGgucGCCGGg -3' miRNA: 3'- -UUgUUGCGCGGGCu--GUGGgCC---UGGCU- -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 252594 | 0.72 | 0.617899 |
|
Target: 5'- aGAUcAUGCGCCCGgaugGCGuCCCGGgACCGAg -3' miRNA: 3'- -UUGuUGCGCGGGC----UGU-GGGCC-UGGCU- -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 321975 | 0.73 | 0.570862 |
|
Target: 5'- cACAGCGCGCCUugaGGCACCU-GAUCGAa -3' miRNA: 3'- uUGUUGCGCGGG---CUGUGGGcCUGGCU- -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 75700 | 0.73 | 0.561544 |
|
Target: 5'- aAACAuuCGUGCUCGGCGCCUGGuCCGu -3' miRNA: 3'- -UUGUu-GCGCGGGCUGUGGGCCuGGCu -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 155812 | 0.73 | 0.543039 |
|
Target: 5'- uGGCAGCGCGcCCCGAUugCCGuGA-CGAg -3' miRNA: 3'- -UUGUUGCGC-GGGCUGugGGC-CUgGCU- -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 63112 | 0.77 | 0.351733 |
|
Target: 5'- gGACGGCGUGCUCGAUGCCaGGGCCGc -3' miRNA: 3'- -UUGUUGCGCGGGCUGUGGgCCUGGCu -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 257392 | 0.79 | 0.272652 |
|
Target: 5'- cGCGAUGUGCCCGACgcGCUCGGGCCa- -3' miRNA: 3'- uUGUUGCGCGGGCUG--UGGGCCUGGcu -5' |
|||||||
| 10305 | 5' | -59.9 | NC_002687.1 | + | 58396 | 1.06 | 0.005183 |
|
Target: 5'- cAACAACGCGCCCGACACCCGGACCGAc -3' miRNA: 3'- -UUGUUGCGCGGGCUGUGGGCCUGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home