miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 3' -54.6 NC_002687.1 + 317029 0.66 0.994206
Target:  5'- gUGAGCgaccaUCCGugGUGUCucgcgagaGGCucCCGGu -3'
miRNA:   3'- aACUUG-----AGGCugCACAG--------CCGuaGGCC- -5'
10306 3' -54.6 NC_002687.1 + 7278 0.66 0.994206
Target:  5'- gUGcAACgcgCgCGGCGUGcagaucguuuUCGGCAUCCGu -3'
miRNA:   3'- aAC-UUGa--G-GCUGCAC----------AGCCGUAGGCc -5'
10306 3' -54.6 NC_002687.1 + 56734 0.66 0.99337
Target:  5'- cUGAGCUuuGACGccguUGUgGGCG-CCGu -3'
miRNA:   3'- aACUUGAggCUGC----ACAgCCGUaGGCc -5'
10306 3' -54.6 NC_002687.1 + 172416 0.66 0.991078
Target:  5'- aUGcGCUUCGAucgaaucaagguggUGcGUCGGCAUCCGa -3'
miRNA:   3'- aACuUGAGGCU--------------GCaCAGCCGUAGGCc -5'
10306 3' -54.6 NC_002687.1 + 75272 0.66 0.990269
Target:  5'- uUUGGucCUCCGACGUGUCacuGGUGUCg-- -3'
miRNA:   3'- -AACUu-GAGGCUGCACAG---CCGUAGgcc -5'
10306 3' -54.6 NC_002687.1 + 313239 0.66 0.990269
Target:  5'- gUGGACUUCGACc-GUCGGCuGUCgUGGu -3'
miRNA:   3'- aACUUGAGGCUGcaCAGCCG-UAG-GCC- -5'
10306 3' -54.6 NC_002687.1 + 225772 0.67 0.986131
Target:  5'- ---uGCUCCGugGacaUGUCGGuCGUucCCGGa -3'
miRNA:   3'- aacuUGAGGCugC---ACAGCC-GUA--GGCC- -5'
10306 3' -54.6 NC_002687.1 + 212311 0.68 0.978665
Target:  5'- -cGAACUCCGGCucgcUGGCAUCCu- -3'
miRNA:   3'- aaCUUGAGGCUGcacaGCCGUAGGcc -5'
10306 3' -54.6 NC_002687.1 + 224851 0.68 0.976405
Target:  5'- -aGAGCcgCCGACGcGgCGGCG-CCGGc -3'
miRNA:   3'- aaCUUGa-GGCUGCaCaGCCGUaGGCC- -5'
10306 3' -54.6 NC_002687.1 + 28619 0.68 0.973974
Target:  5'- -gGAACUCgGcAgGUGcUCGGCggCCGGu -3'
miRNA:   3'- aaCUUGAGgC-UgCAC-AGCCGuaGGCC- -5'
10306 3' -54.6 NC_002687.1 + 280128 0.69 0.959053
Target:  5'- aUGAACUCCcacgcACGUGUCaGCAgcugUCGGu -3'
miRNA:   3'- aACUUGAGGc----UGCACAGcCGUa---GGCC- -5'
10306 3' -54.6 NC_002687.1 + 80675 0.69 0.956934
Target:  5'- cUGAACUCCGACcgaGUcauguacgugccgguGUCGGCAUCg-- -3'
miRNA:   3'- aACUUGAGGCUG---CA---------------CAGCCGUAGgcc -5'
10306 3' -54.6 NC_002687.1 + 316304 0.69 0.95548
Target:  5'- --cGACUuuGAUGacaUGUCGGgAUCCGGu -3'
miRNA:   3'- aacUUGAggCUGC---ACAGCCgUAGGCC- -5'
10306 3' -54.6 NC_002687.1 + 331665 0.69 0.95548
Target:  5'- -cGGACaCCGACaGUGUCGGUGUCgGu -3'
miRNA:   3'- aaCUUGaGGCUG-CACAGCCGUAGgCc -5'
10306 3' -54.6 NC_002687.1 + 293732 0.69 0.947715
Target:  5'- -gGGugUCCuGuuGUGUCGGUggCCGGg -3'
miRNA:   3'- aaCUugAGG-CugCACAGCCGuaGGCC- -5'
10306 3' -54.6 NC_002687.1 + 3214 0.7 0.92963
Target:  5'- ---uGCUCCGACG--UCGGCA-CCGGc -3'
miRNA:   3'- aacuUGAGGCUGCacAGCCGUaGGCC- -5'
10306 3' -54.6 NC_002687.1 + 154357 0.71 0.902153
Target:  5'- gUUGcGCUCUGGCGUacGUCuGCAUCCGa -3'
miRNA:   3'- -AACuUGAGGCUGCA--CAGcCGUAGGCc -5'
10306 3' -54.6 NC_002687.1 + 316154 0.73 0.847402
Target:  5'- -gGAAaaagcaUCCGACGagGUaaCGGCAUCCGGu -3'
miRNA:   3'- aaCUUg-----AGGCUGCa-CA--GCCGUAGGCC- -5'
10306 3' -54.6 NC_002687.1 + 61992 1.09 0.009543
Target:  5'- gUUGAACUCCGACGUGUCGGCAUCCGGg -3'
miRNA:   3'- -AACUUGAGGCUGCACAGCCGUAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.