miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 41317 0.67 0.999248
Target:  5'- uUGCCGGAgaagcgcgaGCCGcAAGCCGugucGAugUUg -3'
miRNA:   3'- -ACGGCCUa--------CGGCuUUCGGU----UUugAAg -5'
10306 5' -50.5 NC_002687.1 + 80416 0.67 0.999248
Target:  5'- cGUCGGuGUGCCGGAcGCCGAu----- -3'
miRNA:   3'- aCGGCC-UACGGCUUuCGGUUuugaag -5'
10306 5' -50.5 NC_002687.1 + 88597 0.67 0.999248
Target:  5'- uUGCUucGGUGUCGAcGGCCGAGGCg-- -3'
miRNA:   3'- -ACGGc-CUACGGCUuUCGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 82010 0.67 0.999248
Target:  5'- cGUuuUGGGUGCUGAgcgggAGGCCAucgcccGGCUUCa -3'
miRNA:   3'- aCG--GCCUACGGCU-----UUCGGUu-----UUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 282907 0.67 0.999248
Target:  5'- cGCCaGAUGCCG-AGGCgGGggUgUCg -3'
miRNA:   3'- aCGGcCUACGGCuUUCGgUUuuGaAG- -5'
10306 5' -50.5 NC_002687.1 + 249006 0.67 0.999084
Target:  5'- gGCCGGgcGCCGAAAggggucguucGCCAuguAUUUg -3'
miRNA:   3'- aCGGCCuaCGGCUUU----------CGGUuu-UGAAg -5'
10306 5' -50.5 NC_002687.1 + 260258 0.67 0.998891
Target:  5'- gGCCGGuguuuCCGGAAGCUAucGCUg- -3'
miRNA:   3'- aCGGCCuac--GGCUUUCGGUuuUGAag -5'
10306 5' -50.5 NC_002687.1 + 130157 0.67 0.998891
Target:  5'- -aUUGGcUGCCGAGAGUCAcuGCUUUc -3'
miRNA:   3'- acGGCCuACGGCUUUCGGUuuUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 197943 0.67 0.998891
Target:  5'- cGCCGag-GCCGAAgcAGCCGAAGgUg- -3'
miRNA:   3'- aCGGCcuaCGGCUU--UCGGUUUUgAag -5'
10306 5' -50.5 NC_002687.1 + 158832 0.67 0.998891
Target:  5'- cGCCGccgGUCGAAAGCCcgGAGGCggCg -3'
miRNA:   3'- aCGGCcuaCGGCUUUCGG--UUUUGaaG- -5'
10306 5' -50.5 NC_002687.1 + 226791 0.67 0.998663
Target:  5'- gUGCCGG-UGCCGGu-GCCGGuGCc-- -3'
miRNA:   3'- -ACGGCCuACGGCUuuCGGUUuUGaag -5'
10306 5' -50.5 NC_002687.1 + 113302 0.67 0.998663
Target:  5'- cGCaCGGAcagGCCGAGcAGCCGAcGGCggaUCg -3'
miRNA:   3'- aCG-GCCUa--CGGCUU-UCGGUU-UUGa--AG- -5'
10306 5' -50.5 NC_002687.1 + 254300 0.68 0.998217
Target:  5'- cGCCGGAauccauugucgagauUGCCGGAGagguGCCcGAACg-- -3'
miRNA:   3'- aCGGCCU---------------ACGGCUUU----CGGuUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 61630 0.68 0.998087
Target:  5'- -cCCGGAUGCCGAcacGUCGGAG-UUCa -3'
miRNA:   3'- acGGCCUACGGCUuu-CGGUUUUgAAG- -5'
10306 5' -50.5 NC_002687.1 + 169614 0.68 0.998087
Target:  5'- aGCCGGG-GCCGGAuaccuguGCCGccGAACcUCc -3'
miRNA:   3'- aCGGCCUaCGGCUUu------CGGU--UUUGaAG- -5'
10306 5' -50.5 NC_002687.1 + 18763 0.68 0.997729
Target:  5'- -aCCGGA-GCCGAAGGaCCAGAAg--- -3'
miRNA:   3'- acGGCCUaCGGCUUUC-GGUUUUgaag -5'
10306 5' -50.5 NC_002687.1 + 291697 0.68 0.997272
Target:  5'- cUGCUGGGUGUgGgGAAGCUAGGuuuucccuacaauACUUCg -3'
miRNA:   3'- -ACGGCCUACGgC-UUUCGGUUU-------------UGAAG- -5'
10306 5' -50.5 NC_002687.1 + 164169 0.68 0.996843
Target:  5'- cGCCGGA-GUCGucacGCaCAGAGCUUUg -3'
miRNA:   3'- aCGGCCUaCGGCuuu-CG-GUUUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 71954 0.68 0.996843
Target:  5'- cGCCGGAgauucucucgUGCuUGAcGGCCAGAAggUCa -3'
miRNA:   3'- aCGGCCU----------ACG-GCUuUCGGUUUUgaAG- -5'
10306 5' -50.5 NC_002687.1 + 280917 0.68 0.996303
Target:  5'- aGCCucagcGAUGCCGggGGCCcguguuGAAGCa-- -3'
miRNA:   3'- aCGGc----CUACGGCuuUCGG------UUUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.