miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10307 5' -45 NC_002687.1 + 274760 0.66 1
Target:  5'- -gUGUcuUCcCCGUGCCcACAAACAGc- -3'
miRNA:   3'- aaACA--AGuGGCAUGGcUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 111577 0.66 1
Target:  5'- cUUUGUcCuCCGguacGCCGACGAACGAc- -3'
miRNA:   3'- -AAACAaGuGGCa---UGGCUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 262031 0.67 1
Target:  5'- --cGUUCGuCgCGUACuCGACGAACAu-- -3'
miRNA:   3'- aaaCAAGU-G-GCAUG-GCUGUUUGUuua -5'
10307 5' -45 NC_002687.1 + 205706 0.67 1
Target:  5'- aUUGUauacgauacUCGCCGUggaggcauugacGCCGAgGGACGAGUc -3'
miRNA:   3'- aAACA---------AGUGGCA------------UGGCUgUUUGUUUA- -5'
10307 5' -45 NC_002687.1 + 235237 0.66 1
Target:  5'- aUUGUUCgggugaaccacGCCGUuaccGCCGAgAAGCAAc- -3'
miRNA:   3'- aAACAAG-----------UGGCA----UGGCUgUUUGUUua -5'
10307 5' -45 NC_002687.1 + 124873 0.66 1
Target:  5'- --gGUUCGCCGUcguGCC-ACAuGCAGAc -3'
miRNA:   3'- aaaCAAGUGGCA---UGGcUGUuUGUUUa -5'
10307 5' -45 NC_002687.1 + 145509 0.66 1
Target:  5'- --aGUUCG-CGUACuCGGCAGACGu-- -3'
miRNA:   3'- aaaCAAGUgGCAUG-GCUGUUUGUuua -5'
10307 5' -45 NC_002687.1 + 8129 0.66 1
Target:  5'- cUUGUUUuaCGUACCcucGACAGACAGAc -3'
miRNA:   3'- aAACAAGugGCAUGG---CUGUUUGUUUa -5'
10307 5' -45 NC_002687.1 + 282047 0.68 0.999999
Target:  5'- -----aCGCCaGUAuCCGACAAGCAGAa -3'
miRNA:   3'- aaacaaGUGG-CAU-GGCUGUUUGUUUa -5'
10307 5' -45 NC_002687.1 + 37251 0.68 0.999999
Target:  5'- ----aUCACUGUGCCGGCcacGACGGGg -3'
miRNA:   3'- aaacaAGUGGCAUGGCUGu--UUGUUUa -5'
10307 5' -45 NC_002687.1 + 38763 0.68 0.999998
Target:  5'- -cUGUUC-CCGcGCCGugGAugAGGUa -3'
miRNA:   3'- aaACAAGuGGCaUGGCugUUugUUUA- -5'
10307 5' -45 NC_002687.1 + 128505 0.68 0.999998
Target:  5'- gUUGgUCACUGaUGCCGACGcGCAGc- -3'
miRNA:   3'- aAACaAGUGGC-AUGGCUGUuUGUUua -5'
10307 5' -45 NC_002687.1 + 123391 0.69 0.999995
Target:  5'- -aUGcgCACC-UGCCGACGAAUGGAg -3'
miRNA:   3'- aaACaaGUGGcAUGGCUGUUUGUUUa -5'
10307 5' -45 NC_002687.1 + 48988 0.69 0.999993
Target:  5'- -gUGUacgUCGCUGUugACCGaACAAACAGAUu -3'
miRNA:   3'- aaACA---AGUGGCA--UGGC-UGUUUGUUUA- -5'
10307 5' -45 NC_002687.1 + 75491 0.71 0.999895
Target:  5'- --cGUUCGCa-UACCGGCAAACAu-- -3'
miRNA:   3'- aaaCAAGUGgcAUGGCUGUUUGUuua -5'
10307 5' -45 NC_002687.1 + 325162 0.72 0.999774
Target:  5'- -cUGUacCGCCGUacccACCGACAAACGAc- -3'
miRNA:   3'- aaACAa-GUGGCA----UGGCUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 324794 0.72 0.999774
Target:  5'- -cUGUacCGCCGUacacACCGACAAACGAc- -3'
miRNA:   3'- aaACAa-GUGGCA----UGGCUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 324410 0.72 0.999774
Target:  5'- -cUGUacCGCCGUacacACCGACAAACGAc- -3'
miRNA:   3'- aaACAa-GUGGCA----UGGCUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 324027 0.72 0.999774
Target:  5'- -cUGUacCGCCGUacacACCGACAAACGAc- -3'
miRNA:   3'- aaACAa-GUGGCA----UGGCUGUUUGUUua -5'
10307 5' -45 NC_002687.1 + 323643 0.72 0.999774
Target:  5'- -cUGUacCGCCGUacacACCGACAAACGAc- -3'
miRNA:   3'- aaACAa-GUGGCA----UGGCUGUUUGUUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.