Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10308 | 3' | -47.1 | NC_002687.1 | + | 293703 | 0.71 | 0.998656 |
Target: 5'- ---gUCGAUCAAAaCUUGCUUGagcaggGGCg -3' miRNA: 3'- uuuaAGCUAGUUUcGGACGAACa-----CCG- -5' |
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10308 | 3' | -47.1 | NC_002687.1 | + | 294952 | 0.7 | 0.999515 |
Target: 5'- ---cUCGAgCAAcGCCUGCcUGUaGGCg -3' miRNA: 3'- uuuaAGCUaGUUuCGGACGaACA-CCG- -5' |
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10308 | 3' | -47.1 | NC_002687.1 | + | 301031 | 0.66 | 0.999996 |
Target: 5'- gAGAUUCGGUCcAGGUgaGCUUcucGGCg -3' miRNA: 3'- -UUUAAGCUAGuUUCGgaCGAAca-CCG- -5' |
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10308 | 3' | -47.1 | NC_002687.1 | + | 305079 | 0.68 | 0.999962 |
Target: 5'- aGGAUUUGGUCGAGGUUggGCUUGaucacacGGCa -3' miRNA: 3'- -UUUAAGCUAGUUUCGGa-CGAACa------CCG- -5' |
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10308 | 3' | -47.1 | NC_002687.1 | + | 322339 | 0.66 | 0.999998 |
Target: 5'- --uUUCGAUCAGGuGCCUcaagGCgcgcUGUGcGCa -3' miRNA: 3'- uuuAAGCUAGUUU-CGGA----CGa---ACAC-CG- -5' |
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10308 | 3' | -47.1 | NC_002687.1 | + | 331219 | 0.71 | 0.99838 |
Target: 5'- ----gCGAgc-GGGCCUGCU-GUGGCg -3' miRNA: 3'- uuuaaGCUaguUUCGGACGAaCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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