miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10308 3' -47.1 NC_002687.1 + 64975 1.12 0.025713
Target:  5'- aAAAUUCGAUCAAAGCCUGCUUGUGGCa -3'
miRNA:   3'- -UUUAAGCUAGUUUCGGACGAACACCG- -5'
10308 3' -47.1 NC_002687.1 + 125976 0.77 0.938961
Target:  5'- cGGAUguaGUCAAAGCCUGCUUacaGUGGCc -3'
miRNA:   3'- -UUUAagcUAGUUUCGGACGAA---CACCG- -5'
10308 3' -47.1 NC_002687.1 + 331219 0.71 0.99838
Target:  5'- ----gCGAgc-GGGCCUGCU-GUGGCg -3'
miRNA:   3'- uuuaaGCUaguUUCGGACGAaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 293703 0.71 0.998656
Target:  5'- ---gUCGAUCAAAaCUUGCUUGagcaggGGCg -3'
miRNA:   3'- uuuaAGCUAGUUUcGGACGAACa-----CCG- -5'
10308 3' -47.1 NC_002687.1 + 83300 0.7 0.999258
Target:  5'- ---aUCGAUCGAgacauGGCCgggggGUUUGcUGGCa -3'
miRNA:   3'- uuuaAGCUAGUU-----UCGGa----CGAAC-ACCG- -5'
10308 3' -47.1 NC_002687.1 + 294952 0.7 0.999515
Target:  5'- ---cUCGAgCAAcGCCUGCcUGUaGGCg -3'
miRNA:   3'- uuuaAGCUaGUUuCGGACGaACA-CCG- -5'
10308 3' -47.1 NC_002687.1 + 84852 0.7 0.999612
Target:  5'- ----cUGGUCAAgcucGGCgUGCgUUGUGGCg -3'
miRNA:   3'- uuuaaGCUAGUU----UCGgACG-AACACCG- -5'
10308 3' -47.1 NC_002687.1 + 198020 0.69 0.99975
Target:  5'- ---cUCGGUCGcgacauuGGGCCUGgggaUGUGGCa -3'
miRNA:   3'- uuuaAGCUAGU-------UUCGGACga--ACACCG- -5'
10308 3' -47.1 NC_002687.1 + 125245 0.69 0.999808
Target:  5'- ----aUGGUCAAcggcGUCUGCaUGUGGCa -3'
miRNA:   3'- uuuaaGCUAGUUu---CGGACGaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 87715 0.68 0.999932
Target:  5'- -----gGGUCAAcGCCggGCgUGUGGCg -3'
miRNA:   3'- uuuaagCUAGUUuCGGa-CGaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 238309 0.68 0.999932
Target:  5'- ----cCGAUCucGGCCcgacGCUUGUcGGCg -3'
miRNA:   3'- uuuaaGCUAGuuUCGGa---CGAACA-CCG- -5'
10308 3' -47.1 NC_002687.1 + 305079 0.68 0.999962
Target:  5'- aGGAUUUGGUCGAGGUUggGCUUGaucacacGGCa -3'
miRNA:   3'- -UUUAAGCUAGUUUCGGa-CGAACa------CCG- -5'
10308 3' -47.1 NC_002687.1 + 248038 0.67 0.999979
Target:  5'- ---aUUGAUCAAAGCU----UGUGGCu -3'
miRNA:   3'- uuuaAGCUAGUUUCGGacgaACACCG- -5'
10308 3' -47.1 NC_002687.1 + 21740 0.67 0.999979
Target:  5'- ---cUCGaAUCucGAGCCaGCU-GUGGCg -3'
miRNA:   3'- uuuaAGC-UAGu-UUCGGaCGAaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 79620 0.67 0.999985
Target:  5'- ---aUCGAcgaugUCGAGGCCacUGCUguaucugaugucgcgGUGGCg -3'
miRNA:   3'- uuuaAGCU-----AGUUUCGG--ACGAa--------------CACCG- -5'
10308 3' -47.1 NC_002687.1 + 171467 0.67 0.999992
Target:  5'- -cGUUCGA-CGAGGCCUcgucgaggggGCUUGUGcCa -3'
miRNA:   3'- uuUAAGCUaGUUUCGGA----------CGAACACcG- -5'
10308 3' -47.1 NC_002687.1 + 301031 0.66 0.999996
Target:  5'- gAGAUUCGGUCcAGGUgaGCUUcucGGCg -3'
miRNA:   3'- -UUUAAGCUAGuUUCGgaCGAAca-CCG- -5'
10308 3' -47.1 NC_002687.1 + 23992 0.66 0.999996
Target:  5'- aGAGUgugUGGUgAAAGCugaCUGCUgucGUGGCg -3'
miRNA:   3'- -UUUAa--GCUAgUUUCG---GACGAa--CACCG- -5'
10308 3' -47.1 NC_002687.1 + 204498 0.66 0.999996
Target:  5'- aGAGUUCGGU-GAAGCUgggGUcgGUGGUg -3'
miRNA:   3'- -UUUAAGCUAgUUUCGGa--CGaaCACCG- -5'
10308 3' -47.1 NC_002687.1 + 276716 0.66 0.999996
Target:  5'- ---aUCGucaCGAAGCUgggGCU-GUGGCg -3'
miRNA:   3'- uuuaAGCua-GUUUCGGa--CGAaCACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.