miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 3' -56.6 NC_002687.1 + 300221 0.67 0.955493
Target:  5'- aUGAGGCACcguUGGUaccgcuucCACCGCCGACu -3'
miRNA:   3'- gACUUUGUG---ACCGcc------GUGGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 88942 0.67 0.955493
Target:  5'- aUGAAcuaaucugcGCGCUGGCGcGgGCCGCgaguucggCGGCAg -3'
miRNA:   3'- gACUU---------UGUGACCGC-CgUGGCG--------GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 314117 0.67 0.955493
Target:  5'- ------aGCUGuCGGCACCGCCGcCAu -3'
miRNA:   3'- gacuuugUGACcGCCGUGGCGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 248282 0.67 0.951732
Target:  5'- -cGAGAUACgaaGGCGaGUAUCGgCCGACu -3'
miRNA:   3'- gaCUUUGUGa--CCGC-CGUGGC-GGCUGu -5'
10310 3' -56.6 NC_002687.1 + 207766 0.67 0.947764
Target:  5'- -aGAGguACACguggaagagGGUGGgcaaUACCGCCGACAa -3'
miRNA:   3'- gaCUU--UGUGa--------CCGCC----GUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 164274 0.67 0.947764
Target:  5'- --cAAGCGCauucagUGGCGGCAUCGgcaCCGGCAc -3'
miRNA:   3'- gacUUUGUG------ACCGCCGUGGC---GGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 271279 0.67 0.947764
Target:  5'- uUGAAaaaACACUGaGCGGUGCUauaacuggaGCUGGCAa -3'
miRNA:   3'- gACUU---UGUGAC-CGCCGUGG---------CGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 304165 0.67 0.947764
Target:  5'- uUGguGCg--GGUGGUGCUGCCGGCGa -3'
miRNA:   3'- gACuuUGugaCCGCCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 79428 0.68 0.938745
Target:  5'- -aGAGACAUUGGUGaGUgugugucuguuuuGCCGUCGAUAc -3'
miRNA:   3'- gaCUUUGUGACCGC-CG-------------UGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 294018 0.68 0.934592
Target:  5'- -gGGAACcCUGGCGG-ACCGaCUGGCu -3'
miRNA:   3'- gaCUUUGuGACCGCCgUGGC-GGCUGu -5'
10310 3' -56.6 NC_002687.1 + 159945 0.68 0.93412
Target:  5'- -gGAAGC-CggGGCGGCcaaggcaGCCGCCGcCAa -3'
miRNA:   3'- gaCUUUGuGa-CCGCCG-------UGGCGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 316052 0.68 0.919489
Target:  5'- -cGguGCgGCUGGCGGUGgUGCCGAUg -3'
miRNA:   3'- gaCuuUG-UGACCGCCGUgGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 305953 0.68 0.919489
Target:  5'- -aGAGGCGCuUGGaaGCAaagaCGCCGACGa -3'
miRNA:   3'- gaCUUUGUG-ACCgcCGUg---GCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 302478 0.69 0.908346
Target:  5'- gUGAcuCACgGGCGGUgaaccgcuugACgCGCCGGCAg -3'
miRNA:   3'- gACUuuGUGaCCGCCG----------UG-GCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 133081 0.69 0.902455
Target:  5'- -gGAGAgACU-GCGGC-CCGCCGAa- -3'
miRNA:   3'- gaCUUUgUGAcCGCCGuGGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 158798 0.69 0.902455
Target:  5'- gUGAuGCAC-GGCGGCgacaacgacggACCGCCGuCGc -3'
miRNA:   3'- gACUuUGUGaCCGCCG-----------UGGCGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 106744 0.69 0.883533
Target:  5'- gUGAuauCACUGGUGGaAUUGCUGACAu -3'
miRNA:   3'- gACUuu-GUGACCGCCgUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 226533 0.7 0.855515
Target:  5'- gCUGGGACuGCUGGaCGGCugggACCGCUGGg- -3'
miRNA:   3'- -GACUUUG-UGACC-GCCG----UGGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 224153 0.7 0.848042
Target:  5'- gCUGGcgcuGGCGCUGGCGGUGgCGgUGGCGg -3'
miRNA:   3'- -GACU----UUGUGACCGCCGUgGCgGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 313753 0.7 0.840393
Target:  5'- --cAAGCuaugaUGGCGGCGgUGCCGACAg -3'
miRNA:   3'- gacUUUGug---ACCGCCGUgGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.