Results 21 - 40 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10310 | 5' | -56 | NC_002687.1 | + | 69180 | 0.66 | 0.983214 |
Target: 5'- uACUGCUGUUGCgCGagcUUGCCGACAUcaUGGg -3' miRNA: 3'- -UGGCGGCGGUG-GU---AGCGGUUGUA--ACC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 10531 | 0.66 | 0.983214 |
Target: 5'- gACCGCgGCCACauacagcaUAUCGCaAACGgugcUGGg -3' miRNA: 3'- -UGGCGgCGGUG--------GUAGCGgUUGUa---ACC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 277506 | 0.66 | 0.983214 |
Target: 5'- cCCGCgCGCUGCC-UCGUCGGCGgccaucGGa -3' miRNA: 3'- uGGCG-GCGGUGGuAGCGGUUGUaa----CC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 29029 | 0.66 | 0.983214 |
Target: 5'- gAUCGCUGCCAUugcaagcaCGUCGuCCAGCAaUGcGg -3' miRNA: 3'- -UGGCGGCGGUG--------GUAGC-GGUUGUaAC-C- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 237594 | 0.66 | 0.984951 |
Target: 5'- cACCGCCGUCAUUGaCGaCCGA-AUUGGu -3' miRNA: 3'- -UGGCGGCGGUGGUaGC-GGUUgUAACC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 93672 | 0.66 | 0.984951 |
Target: 5'- aACCGCCGUCAUCGgcguaaUCGCCcgg---GGa -3' miRNA: 3'- -UGGCGGCGGUGGU------AGCGGuuguaaCC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 22197 | 0.66 | 0.984951 |
Target: 5'- cCCGCCGCCAgCGUgugCGCacgaAGCAUg-- -3' miRNA: 3'- uGGCGGCGGUgGUA---GCGg---UUGUAacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 18119 | 0.66 | 0.984951 |
Target: 5'- aGCCGCUGCggCugCAaCGCuUAGCAUUGa -3' miRNA: 3'- -UGGCGGCG--GugGUaGCG-GUUGUAACc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 317741 | 0.66 | 0.98133 |
Target: 5'- gACCGCCuGCUACUggUGCCAAUucUGu -3' miRNA: 3'- -UGGCGG-CGGUGGuaGCGGUUGuaACc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 323970 | 0.66 | 0.979292 |
Target: 5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3' miRNA: 3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 325121 | 0.66 | 0.979292 |
Target: 5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3' miRNA: 3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 324737 | 0.66 | 0.979292 |
Target: 5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3' miRNA: 3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 324354 | 0.66 | 0.979292 |
Target: 5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3' miRNA: 3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 210286 | 0.66 | 0.985606 |
Target: 5'- cACCGCCaccacgggcaccacuGCCACCAcUGCCAcUAcgGGc -3' miRNA: 3'- -UGGCGG---------------CGGUGGUaGCGGUuGUaaCC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 95395 | 0.67 | 0.966566 |
Target: 5'- -aCGCCG--GCCGUcucCGCCAACAUUGa -3' miRNA: 3'- ugGCGGCggUGGUA---GCGGUUGUAACc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 224599 | 0.67 | 0.966566 |
Target: 5'- cAUCGCCaUCGCCAUCGCCAuCGc--- -3' miRNA: 3'- -UGGCGGcGGUGGUAGCGGUuGUaacc -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 114073 | 0.67 | 0.963474 |
Target: 5'- aAUCGCgGUCGCCGUCGUgGugGU-GGc -3' miRNA: 3'- -UGGCGgCGGUGGUAGCGgUugUAaCC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 314563 | 0.67 | 0.963474 |
Target: 5'- -aCGUCGCCucguacgaccACCAUCGCCcauCcgUGGc -3' miRNA: 3'- ugGCGGCGG----------UGGUAGCGGuu-GuaACC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 80977 | 0.67 | 0.972187 |
Target: 5'- -aCGcCCGCgACCAcCGCCAugGCAcccUUGGa -3' miRNA: 3'- ugGC-GGCGgUGGUaGCGGU--UGU---AACC- -5' |
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10310 | 5' | -56 | NC_002687.1 | + | 223840 | 0.67 | 0.960188 |
Target: 5'- cGCCcCCGCCACCGcaucccgaacUCcGCCAGCAc--- -3' miRNA: 3'- -UGGcGGCGGUGGU----------AG-CGGUUGUaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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