miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 5' -56 NC_002687.1 + 239843 0.66 0.98133
Target:  5'- gGCCGCCGCgGCgGaUGCUGGCAagaGGa -3'
miRNA:   3'- -UGGCGGCGgUGgUaGCGGUUGUaa-CC- -5'
10310 5' -56 NC_002687.1 + 260902 0.66 0.98133
Target:  5'- aGCCGCUGCCGCCGUCaagaggguccCCAAUc---- -3'
miRNA:   3'- -UGGCGGCGGUGGUAGc---------GGUUGuaacc -5'
10310 5' -56 NC_002687.1 + 317741 0.66 0.98133
Target:  5'- gACCGCCuGCUACUggUGCCAAUucUGu -3'
miRNA:   3'- -UGGCGG-CGGUGGuaGCGGUUGuaACc -5'
10310 5' -56 NC_002687.1 + 323970 0.66 0.979292
Target:  5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3'
miRNA:   3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 324354 0.66 0.979292
Target:  5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3'
miRNA:   3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 325121 0.66 0.979292
Target:  5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3'
miRNA:   3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 270752 0.66 0.979292
Target:  5'- cCCGCCcgaaGCCugUAUCGUCuGCucuUUGGc -3'
miRNA:   3'- uGGCGG----CGGugGUAGCGGuUGu--AACC- -5'
10310 5' -56 NC_002687.1 + 324737 0.66 0.979292
Target:  5'- aACCuucCCGCCgGCCA-CGCCAGCAa--- -3'
miRNA:   3'- -UGGc--GGCGG-UGGUaGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 151114 0.66 0.977093
Target:  5'- gACCGgCG-CACUuaCGCCAACggUGGg -3'
miRNA:   3'- -UGGCgGCgGUGGuaGCGGUUGuaACC- -5'
10310 5' -56 NC_002687.1 + 56554 0.66 0.977093
Target:  5'- -gCGUCGCCACCAcacaGCCcguuGACGggGGa -3'
miRNA:   3'- ugGCGGCGGUGGUag--CGG----UUGUaaCC- -5'
10310 5' -56 NC_002687.1 + 197994 0.66 0.977093
Target:  5'- cCCGUCGUCucauCCugaaaGUCGCCcucggucgcGACAUUGGg -3'
miRNA:   3'- uGGCGGCGGu---GG-----UAGCGG---------UUGUAACC- -5'
10310 5' -56 NC_002687.1 + 273244 0.66 0.974726
Target:  5'- aAUCGCUGCUuCC-UCGCUGuCAUUGGu -3'
miRNA:   3'- -UGGCGGCGGuGGuAGCGGUuGUAACC- -5'
10310 5' -56 NC_002687.1 + 36075 0.66 0.974726
Target:  5'- cCCgGCCGCCACCAUUGCgCuguCAa--- -3'
miRNA:   3'- uGG-CGGCGGUGGUAGCG-Guu-GUaacc -5'
10310 5' -56 NC_002687.1 + 303834 0.66 0.974726
Target:  5'- cAUCGCgGCCACCGaUGaCAGCAgcGGg -3'
miRNA:   3'- -UGGCGgCGGUGGUaGCgGUUGUaaCC- -5'
10310 5' -56 NC_002687.1 + 270194 0.67 0.972187
Target:  5'- uACCagGCgGCCgACC-UCGCCGGCAaccUGGa -3'
miRNA:   3'- -UGG--CGgCGG-UGGuAGCGGUUGUa--ACC- -5'
10310 5' -56 NC_002687.1 + 11767 0.67 0.972187
Target:  5'- uGCCGCUGCUGCCAcCGCUAcCGcUGc -3'
miRNA:   3'- -UGGCGGCGGUGGUaGCGGUuGUaACc -5'
10310 5' -56 NC_002687.1 + 80977 0.67 0.972187
Target:  5'- -aCGcCCGCgACCAcCGCCAugGCAcccUUGGa -3'
miRNA:   3'- ugGC-GGCGgUGGUaGCGGU--UGU---AACC- -5'
10310 5' -56 NC_002687.1 + 224464 0.67 0.972187
Target:  5'- nGCCaCCGCCACCgcgucccgaacGUCcGCCAGCAc--- -3'
miRNA:   3'- -UGGcGGCGGUGG-----------UAG-CGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 307885 0.67 0.972187
Target:  5'- uACCGCUGCCA-CAUCaCgCGGCGUgacUGGg -3'
miRNA:   3'- -UGGCGGCGGUgGUAGcG-GUUGUA---ACC- -5'
10310 5' -56 NC_002687.1 + 318275 0.67 0.972187
Target:  5'- -aCGCCGCCACCGccuUUGUCAucucUGGu -3'
miRNA:   3'- ugGCGGCGGUGGU---AGCGGUuguaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.