Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10311 | 5' | -53.8 | NC_002687.1 | + | 225210 | 0.72 | 0.876957 |
Target: 5'- -cCGGC-GCCGCCGCGUCGGcggcucUCCGAu -3' miRNA: 3'- cuGCUGuUGGUGGUGCAGCCa-----AGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 232169 | 0.73 | 0.83258 |
Target: 5'- aAUGAUAGCCACCGCGacauuuucaggcacgUGGUUCCAAc -3' miRNA: 3'- cUGCUGUUGGUGGUGCa--------------GCCAAGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 255160 | 0.66 | 0.995394 |
Target: 5'- aACGGgGGCCGCCGCGUUGa-UCCu- -3' miRNA: 3'- cUGCUgUUGGUGGUGCAGCcaAGGuu -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 255916 | 0.67 | 0.985328 |
Target: 5'- cGACGGCAACCccuugcugcuuCCGCGUgGGcUUUCGAa -3' miRNA: 3'- -CUGCUGUUGGu----------GGUGCAgCC-AAGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 256665 | 0.69 | 0.96673 |
Target: 5'- cGGCGGguAUCACCACGUCGGcagCAAc -3' miRNA: 3'- -CUGCUguUGGUGGUGCAGCCaagGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 297714 | 0.66 | 0.993005 |
Target: 5'- -cCGACAACCGCCGgGgaUGGggCCGGa -3' miRNA: 3'- cuGCUGUUGGUGGUgCa-GCCaaGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 301518 | 0.68 | 0.98169 |
Target: 5'- --gGGCAACC-CCACGUCuGcUCCAAg -3' miRNA: 3'- cugCUGUUGGuGGUGCAGcCaAGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 313113 | 0.72 | 0.869193 |
Target: 5'- cGACGGCGGCCAuaucgacUCGCGUUGGUgcaaCCGAg -3' miRNA: 3'- -CUGCUGUUGGU-------GGUGCAGCCAa---GGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 330945 | 0.67 | 0.990925 |
Target: 5'- uACGugAAUCGCCACGaCGGcugCCGg -3' miRNA: 3'- cUGCugUUGGUGGUGCaGCCaa-GGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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