miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10311 5' -53.8 NC_002687.1 + 141875 0.71 0.909047
Target:  5'- uGCGACuGCCACUACGUCauGUUCCu- -3'
miRNA:   3'- cUGCUGuUGGUGGUGCAGc-CAAGGuu -5'
10311 5' -53.8 NC_002687.1 + 232169 0.73 0.83258
Target:  5'- aAUGAUAGCCACCGCGacauuuucaggcacgUGGUUCCAAc -3'
miRNA:   3'- cUGCUGUUGGUGGUGCa--------------GCCAAGGUU- -5'
10311 5' -53.8 NC_002687.1 + 208774 0.77 0.646487
Target:  5'- cGACGACGACCACgacgACGUUGGUgCCGAg -3'
miRNA:   3'- -CUGCUGUUGGUGg---UGCAGCCAaGGUU- -5'
10311 5' -53.8 NC_002687.1 + 208702 0.77 0.646487
Target:  5'- cGACGACGACCACgacgACGUUGGUgCCGAg -3'
miRNA:   3'- -CUGCUGUUGGUGg---UGCAGCCAaGGUU- -5'
10311 5' -53.8 NC_002687.1 + 112651 0.66 0.993892
Target:  5'- cGAcCGACGAUaCACCACGcUCuugcugagacagGGUUCCAAg -3'
miRNA:   3'- -CU-GCUGUUG-GUGGUGC-AG------------CCAAGGUU- -5'
10311 5' -53.8 NC_002687.1 + 56875 0.68 0.972444
Target:  5'- cGCGuguauGCCGCgGCGcCGGUUCCGAg -3'
miRNA:   3'- cUGCugu--UGGUGgUGCaGCCAAGGUU- -5'
10311 5' -53.8 NC_002687.1 + 78849 0.72 0.8838
Target:  5'- uGCG-CAgcGCgGCCACGUCGGuUUCCAAu -3'
miRNA:   3'- cUGCuGU--UGgUGGUGCAGCC-AAGGUU- -5'
10311 5' -53.8 NC_002687.1 + 12908 0.66 0.994686
Target:  5'- -cUGAgGACCACCugGuUCGGgaaCCAGc -3'
miRNA:   3'- cuGCUgUUGGUGGugC-AGCCaa-GGUU- -5'
10311 5' -53.8 NC_002687.1 + 256665 0.69 0.96673
Target:  5'- cGGCGGguAUCACCACGUCGGcagCAAc -3'
miRNA:   3'- -CUGCUguUGGUGGUGCAGCCaagGUU- -5'
10311 5' -53.8 NC_002687.1 + 79254 0.69 0.96358
Target:  5'- uACGACGugCGCguCACGUCGGccucaUCCAAc -3'
miRNA:   3'- cUGCUGUugGUG--GUGCAGCCa----AGGUU- -5'
10311 5' -53.8 NC_002687.1 + 142587 0.69 0.96358
Target:  5'- cGAUGugGAUgGCCAUuUUGGUUCCAu -3'
miRNA:   3'- -CUGCugUUGgUGGUGcAGCCAAGGUu -5'
10311 5' -53.8 NC_002687.1 + 255160 0.66 0.995394
Target:  5'- aACGGgGGCCGCCGCGUUGa-UCCu- -3'
miRNA:   3'- cUGCUgUUGGUGGUGCAGCcaAGGuu -5'
10311 5' -53.8 NC_002687.1 + 117082 0.66 0.995394
Target:  5'- cACGACAACaacaACCACGugUCGGUgcaCAu -3'
miRNA:   3'- cUGCUGUUGg---UGGUGC--AGCCAag-GUu -5'
10311 5' -53.8 NC_002687.1 + 170760 0.67 0.986925
Target:  5'- uGACGAUGACC-UCGCGUCGcGcgCCGGu -3'
miRNA:   3'- -CUGCUGUUGGuGGUGCAGC-CaaGGUU- -5'
10311 5' -53.8 NC_002687.1 + 225210 0.72 0.876957
Target:  5'- -cCGGC-GCCGCCGCGUCGGcggcucUCCGAu -3'
miRNA:   3'- cuGCUGuUGGUGGUGCAGCCa-----AGGUU- -5'
10311 5' -53.8 NC_002687.1 + 136011 0.72 0.8838
Target:  5'- uGAUGuACAACCggGCCGCGUUGGUgugauuUCCAAc -3'
miRNA:   3'- -CUGC-UGUUGG--UGGUGCAGCCA------AGGUU- -5'
10311 5' -53.8 NC_002687.1 + 98012 0.7 0.935635
Target:  5'- aACaACAACCACC-CGUCGGUgucaccgCCGAc -3'
miRNA:   3'- cUGcUGUUGGUGGuGCAGCCAa------GGUU- -5'
10311 5' -53.8 NC_002687.1 + 211329 0.69 0.960227
Target:  5'- cGACuGGCGACUACgACGUCGuGcUUCCGGa -3'
miRNA:   3'- -CUG-CUGUUGGUGgUGCAGC-C-AAGGUU- -5'
10311 5' -53.8 NC_002687.1 + 91586 0.67 0.985328
Target:  5'- cGACGACGGCUucuuCguUGUCGGUcCCGAu -3'
miRNA:   3'- -CUGCUGUUGGu---GguGCAGCCAaGGUU- -5'
10311 5' -53.8 NC_002687.1 + 75641 0.69 0.969683
Target:  5'- aGACGACGacACCAgugaCACGUCGGaggaCCAAa -3'
miRNA:   3'- -CUGCUGU--UGGUg---GUGCAGCCaa--GGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.