Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10311 | 5' | -53.8 | NC_002687.1 | + | 141875 | 0.71 | 0.909047 |
Target: 5'- uGCGACuGCCACUACGUCauGUUCCu- -3' miRNA: 3'- cUGCUGuUGGUGGUGCAGc-CAAGGuu -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 78849 | 0.72 | 0.8838 |
Target: 5'- uGCG-CAgcGCgGCCACGUCGGuUUCCAAu -3' miRNA: 3'- cUGCuGU--UGgUGGUGCAGCC-AAGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 136011 | 0.72 | 0.8838 |
Target: 5'- uGAUGuACAACCggGCCGCGUUGGUgugauuUCCAAc -3' miRNA: 3'- -CUGC-UGUUGG--UGGUGCAGCCA------AGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 225210 | 0.72 | 0.876957 |
Target: 5'- -cCGGC-GCCGCCGCGUCGGcggcucUCCGAu -3' miRNA: 3'- cuGCUGuUGGUGGUGCAGCCa-----AGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 313113 | 0.72 | 0.869193 |
Target: 5'- cGACGGCGGCCAuaucgacUCGCGUUGGUgcaaCCGAg -3' miRNA: 3'- -CUGCUGUUGGU-------GGUGCAGCCAa---GGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 232169 | 0.73 | 0.83258 |
Target: 5'- aAUGAUAGCCACCGCGacauuuucaggcacgUGGUUCCAAc -3' miRNA: 3'- cUGCUGUUGGUGGUGCa--------------GCCAAGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 208774 | 0.77 | 0.646487 |
Target: 5'- cGACGACGACCACgacgACGUUGGUgCCGAg -3' miRNA: 3'- -CUGCUGUUGGUGg---UGCAGCCAaGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 208702 | 0.77 | 0.646487 |
Target: 5'- cGACGACGACCACgacgACGUUGGUgCCGAg -3' miRNA: 3'- -CUGCUGUUGGUGg---UGCAGCCAaGGUU- -5' |
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10311 | 5' | -53.8 | NC_002687.1 | + | 69852 | 1.06 | 0.016264 |
Target: 5'- uGACGACAACCACCACGUCGGUUCCAAu -3' miRNA: 3'- -CUGCUGUUGGUGGUGCAGCCAAGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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