Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 88895 | 0.66 | 0.999832 |
|
Target: 5'- -uCUUGUuCCAAUCCACUgcuUCUcaugcccucgUCGGAu -3' miRNA: 3'- ucGAGCAuGGUUAGGUGA---AGA----------AGCCU- -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 108106 | 0.66 | 0.999733 |
|
Target: 5'- cGCggCGUGCCaAGUCCGCgg---CGGAu -3' miRNA: 3'- uCGa-GCAUGG-UUAGGUGaagaaGCCU- -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 147961 | 0.67 | 0.999585 |
|
Target: 5'- gAGuCUUGUGC--AUCCGCUcgUCUUCGGc -3' miRNA: 3'- -UC-GAGCAUGguUAGGUGA--AGAAGCCu -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 327056 | 0.68 | 0.998064 |
|
Target: 5'- gGGuCUUGUAUCAAuUCCGCUucagacguguUCUUCGGu -3' miRNA: 3'- -UC-GAGCAUGGUU-AGGUGA----------AGAAGCCu -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 171444 | 0.69 | 0.996823 |
|
Target: 5'- gGGCUUGUGCCAAauuuguUUCuCUUCUcCGGGu -3' miRNA: 3'- -UCGAGCAUGGUU------AGGuGAAGAaGCCU- -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 96833 | 0.69 | 0.996286 |
|
Target: 5'- cGCUCGcgggGCU--UCCACUUCgcacgccgUCGGAa -3' miRNA: 3'- uCGAGCa---UGGuuAGGUGAAGa-------AGCCU- -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 260430 | 0.7 | 0.993341 |
|
Target: 5'- aAGCUCGUuCUGGgaCCACUcacgagucUCUUCGGAa -3' miRNA: 3'- -UCGAGCAuGGUUa-GGUGA--------AGAAGCCU- -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 63120 | 0.71 | 0.987311 |
|
Target: 5'- uGCUCGaUGCCAGggCCGCUaaCUUCGGc -3' miRNA: 3'- uCGAGC-AUGGUUa-GGUGAa-GAAGCCu -5' |
|||||||
| 10312 | 3' | -50.2 | NC_002687.1 | + | 75689 | 1.09 | 0.021228 |
|
Target: 5'- cAGCUCGUACCAAUCCACUUCUUCGGAc -3' miRNA: 3'- -UCGAGCAUGGUUAGGUGAAGAAGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home