miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10312 5' -54.3 NC_002687.1 + 68375 0.66 0.994947
Target:  5'- cCGUCCcaaaagGAGGAAGCAGACuuuuccaAC-ACGCUa -3'
miRNA:   3'- -GCAGG------CUCCUUCGUCUGc------UGcUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 270928 0.66 0.994947
Target:  5'- --aCCGAGuGGGCGGGugcCGugGACAUCc -3'
miRNA:   3'- gcaGGCUCcUUCGUCU---GCugCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 104707 0.66 0.994512
Target:  5'- -cUUCGAGGGaccAGCcgaAGACGACGAguacguggguggccaCGCCg -3'
miRNA:   3'- gcAGGCUCCU---UCG---UCUGCUGCU---------------GUGG- -5'
10312 5' -54.3 NC_002687.1 + 295224 0.66 0.994205
Target:  5'- cCGUCuCGGGGucGUGGGCGuacuCGAUGCa -3'
miRNA:   3'- -GCAG-GCUCCuuCGUCUGCu---GCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 97587 0.66 0.994205
Target:  5'- aCGcCCaGGGGAAucgguGCuGGgGAUGACGCCg -3'
miRNA:   3'- -GCaGG-CUCCUU-----CGuCUgCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 104786 0.66 0.994205
Target:  5'- gGagUGAGGAGGgAuucGAUGGCGACACa -3'
miRNA:   3'- gCagGCUCCUUCgU---CUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 225610 0.66 0.994205
Target:  5'- aCGgCgGAGG-AGUGGAgGACG-CACCg -3'
miRNA:   3'- -GCaGgCUCCuUCGUCUgCUGCuGUGG- -5'
10312 5' -54.3 NC_002687.1 + 37713 0.67 0.993376
Target:  5'- gGUCCGAGGuGGCuGguGCGuCGGCAa- -3'
miRNA:   3'- gCAGGCUCCuUCGuC--UGCuGCUGUgg -5'
10312 5' -54.3 NC_002687.1 + 159376 0.67 0.992456
Target:  5'- -cUCC-AGGAuGGCacaAGcCGACGACGCCg -3'
miRNA:   3'- gcAGGcUCCU-UCG---UCuGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 133356 0.67 0.992456
Target:  5'- uGUCCGucuuuGCAGACGGaGACACg -3'
miRNA:   3'- gCAGGCuccuuCGUCUGCUgCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 21669 0.67 0.991436
Target:  5'- -cUCCGguGGGGAGCGGACGA-GAC-Ca -3'
miRNA:   3'- gcAGGC--UCCUUCGUCUGCUgCUGuGg -5'
10312 5' -54.3 NC_002687.1 + 103095 0.67 0.991436
Target:  5'- aCG-CCG-GGAAcaacGCGGGugcCGACGACAUCa -3'
miRNA:   3'- -GCaGGCuCCUU----CGUCU---GCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 307747 0.67 0.991436
Target:  5'- -aUCUGuGGAGGCcauggccaucGGCGAgGGCGCCg -3'
miRNA:   3'- gcAGGCuCCUUCGu---------CUGCUgCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 253550 0.67 0.989072
Target:  5'- uGUuuGAGGuucuucCGGAUGACGAauCGCCa -3'
miRNA:   3'- gCAggCUCCuuc---GUCUGCUGCU--GUGG- -5'
10312 5' -54.3 NC_002687.1 + 159081 0.67 0.989072
Target:  5'- -uUCCGgugcAGGAgGGUAGGUGGCGACAUCa -3'
miRNA:   3'- gcAGGC----UCCU-UCGUCUGCUGCUGUGG- -5'
10312 5' -54.3 NC_002687.1 + 146073 0.67 0.989072
Target:  5'- aGUCUccccagguGGGGucgcucucgcGGUAGACGACGGCGCa -3'
miRNA:   3'- gCAGG--------CUCCu---------UCGUCUGCUGCUGUGg -5'
10312 5' -54.3 NC_002687.1 + 315463 0.67 0.988942
Target:  5'- uCGUCCGAGGAgcuugAGCuugaaucAGAUGAUGGgAUg -3'
miRNA:   3'- -GCAGGCUCCU-----UCG-------UCUGCUGCUgUGg -5'
10312 5' -54.3 NC_002687.1 + 75622 0.67 0.988272
Target:  5'- aCGUCgGAGGAccaaacAGCGGGCGAagaagaugaugauguCGACGa- -3'
miRNA:   3'- -GCAGgCUCCU------UCGUCUGCU---------------GCUGUgg -5'
10312 5' -54.3 NC_002687.1 + 199802 0.67 0.987714
Target:  5'- ---gCGAGGAGGUggAGGCGAuCGACuCCu -3'
miRNA:   3'- gcagGCUCCUUCG--UCUGCU-GCUGuGG- -5'
10312 5' -54.3 NC_002687.1 + 109183 0.67 0.987714
Target:  5'- aGUUCaauGAucAAGCuGGGCGACGACGCCg -3'
miRNA:   3'- gCAGG---CUccUUCG-UCUGCUGCUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.