miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 206110 0.67 0.926006
Target:  5'- cGACGGCGuGguCCaCGGACCCGUucaucgcuACCAa -3'
miRNA:   3'- uUUGCCGU-CguGG-GUUUGGGCG--------UGGU- -5'
10313 3' -57.1 NC_002687.1 + 85793 0.67 0.926006
Target:  5'- --cCGGCGGC-CCCuuaGGACCCugagggcccugaGCACCGg -3'
miRNA:   3'- uuuGCCGUCGuGGG---UUUGGG------------CGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 92832 0.67 0.926006
Target:  5'- gGAACGGCuuauauuagAGCAUCCGugaCCGaCACCGg -3'
miRNA:   3'- -UUUGCCG---------UCGUGGGUuugGGC-GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 237073 0.67 0.926006
Target:  5'- uGGACGaauGCAGCGCCUcgaAGACCgUGCGCUAc -3'
miRNA:   3'- -UUUGC---CGUCGUGGG---UUUGG-GCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 280308 0.67 0.920749
Target:  5'- gGAGCGGUAGCggAUCCAcgaucACCgGCAUCAc -3'
miRNA:   3'- -UUUGCCGUCG--UGGGUu----UGGgCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 142255 0.67 0.920211
Target:  5'- cGGCGGCAGUagacaacACCCcucuACCCGCAaCGa -3'
miRNA:   3'- uUUGCCGUCG-------UGGGuu--UGGGCGUgGU- -5'
10313 3' -57.1 NC_002687.1 + 300403 0.67 0.915271
Target:  5'- --gUGGCuuuGaCGCCCGAGCCCacaCACCAa -3'
miRNA:   3'- uuuGCCGu--C-GUGGGUUUGGGc--GUGGU- -5'
10313 3' -57.1 NC_002687.1 + 83014 0.67 0.909575
Target:  5'- -cGCGGCAGCuucACCguAACCUGUGCa- -3'
miRNA:   3'- uuUGCCGUCG---UGGguUUGGGCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 18257 0.67 0.909575
Target:  5'- uGGCGGCAGCuucugguCCCAcACUCaCGCCGc -3'
miRNA:   3'- uUUGCCGUCGu------GGGUuUGGGcGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 84744 0.67 0.909575
Target:  5'- aAAACGaCGGCACCCAcgaccACCUGUACUu -3'
miRNA:   3'- -UUUGCcGUCGUGGGUu----UGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 282082 0.67 0.908994
Target:  5'- cAGCGGCGGCucgggucccuUCCAAACCUGCguuuuguACCGc -3'
miRNA:   3'- uUUGCCGUCGu---------GGGUUUGGGCG-------UGGU- -5'
10313 3' -57.1 NC_002687.1 + 267497 0.67 0.908994
Target:  5'- aAAAUGGCuuccaucGGCACCCAuACUgcaacaauugguUGCACCAg -3'
miRNA:   3'- -UUUGCCG-------UCGUGGGUuUGG------------GCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 6350 0.68 0.903661
Target:  5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3'
miRNA:   3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 283196 0.68 0.903661
Target:  5'- gGGGCGGCAGCA-CCAGGCgCgGCggggGCCGu -3'
miRNA:   3'- -UUUGCCGUCGUgGGUUUG-GgCG----UGGU- -5'
10313 3' -57.1 NC_002687.1 + 57701 0.68 0.903661
Target:  5'- --uCGGCGGCGCaCGGACaCCGC-CCGc -3'
miRNA:   3'- uuuGCCGUCGUGgGUUUG-GGCGuGGU- -5'
10313 3' -57.1 NC_002687.1 + 5526 0.68 0.903661
Target:  5'- gGGACGaccaGCGGCGCUCAGACC-GCugCGa -3'
miRNA:   3'- -UUUGC----CGUCGUGGGUUUGGgCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 307027 0.68 0.903661
Target:  5'- --cUGGCGGCAUCCGcgaUCGUACCAg -3'
miRNA:   3'- uuuGCCGUCGUGGGUuugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 281760 0.68 0.897532
Target:  5'- gAggUGGCAGCGCaagCCGcuCCCGUugCGc -3'
miRNA:   3'- -UuuGCCGUCGUG---GGUuuGGGCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 8654 0.68 0.897532
Target:  5'- aAAACGGUgcccgccagcAGCAUCCGAcAgCUGCGCCAu -3'
miRNA:   3'- -UUUGCCG----------UCGUGGGUU-UgGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 145680 0.68 0.89119
Target:  5'- -cGCGuCAGcCACCUcgguGCCCGCGCCGu -3'
miRNA:   3'- uuUGCcGUC-GUGGGuu--UGGGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.