Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10313 | 5' | -58.7 | NC_002687.1 | + | 159345 | 0.67 | 0.911583 |
Target: 5'- aGGUGcaGCUGCAGg---CGCuGUGCUCGGc -3' miRNA: 3'- -CCGC--CGGCGUCaagaGCG-CACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 99544 | 0.69 | 0.823406 |
Target: 5'- aGGCGGUcguCGCGGcgCUCGCGcGaUCGAu -3' miRNA: 3'- -CCGCCG---GCGUCaaGAGCGCaCgAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 63060 | 0.69 | 0.831238 |
Target: 5'- uGGUGGCCGCGGUcgaaucagguucUCUUGCucuUGUUCa- -3' miRNA: 3'- -CCGCCGGCGUCA------------AGAGCGc--ACGAGcu -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 10334 | 0.69 | 0.846428 |
Target: 5'- uGGCGGCgGCAGUUgUgGCaGUGUcaucCGAa -3' miRNA: 3'- -CCGCCGgCGUCAAgAgCG-CACGa---GCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 282061 | 0.68 | 0.867943 |
Target: 5'- cGGCaggGGCCGUAGUggcagcaGCGgcgGCUCGGg -3' miRNA: 3'- -CCG---CCGGCGUCAagag---CGCa--CGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 262022 | 0.68 | 0.874756 |
Target: 5'- aGCGuCCGCcGUUCgUCGCGUaCUCGAc -3' miRNA: 3'- cCGCcGGCGuCAAG-AGCGCAcGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 40226 | 0.68 | 0.887816 |
Target: 5'- uGGUGGCCuuucuGUAGUguUCUUGUGUGCgugCGu -3' miRNA: 3'- -CCGCCGG-----CGUCA--AGAGCGCACGa--GCu -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 223606 | 0.67 | 0.894057 |
Target: 5'- uGGUGGCCGCAacacaccacGUUCUUcUGUGCcagcguUCGAc -3' miRNA: 3'- -CCGCCGGCGU---------CAAGAGcGCACG------AGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 97308 | 0.67 | 0.898308 |
Target: 5'- gGGCGGUCGaacuGuUUCUCGCuuguaaugggaacaGUGCUCGc -3' miRNA: 3'- -CCGCCGGCgu--C-AAGAGCG--------------CACGAGCu -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 44138 | 0.71 | 0.746082 |
Target: 5'- -cCGGCCGCAuccaUCUCGUcauaaugGUGCUCGAu -3' miRNA: 3'- ccGCCGGCGUca--AGAGCG-------CACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 298061 | 0.74 | 0.559518 |
Target: 5'- cGCGGCCGCcGccgCgCGCGUGCUUGGa -3' miRNA: 3'- cCGCCGGCGuCaa-GaGCGCACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 71951 | 0.67 | 0.9001 |
Target: 5'- cGCcGCCGgAGaUUCUCuCGUGCUUGAc -3' miRNA: 3'- cCGcCGGCgUC-AAGAGcGCACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 234196 | 0.67 | 0.91702 |
Target: 5'- aGUGGCCGCuGaUCggaagcaaCGCGaGCUCGAc -3' miRNA: 3'- cCGCCGGCGuCaAGa-------GCGCaCGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 201854 | 0.66 | 0.932097 |
Target: 5'- cGGCGGCUuggcaCAGUggCUcaCGCGcGCUCGGg -3' miRNA: 3'- -CCGCCGGc----GUCAa-GA--GCGCaCGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 96349 | 0.66 | 0.949329 |
Target: 5'- uGGauCGGuUCGaGGUUgCUCGCGUGCUUGGu -3' miRNA: 3'- -CC--GCC-GGCgUCAA-GAGCGCACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 213330 | 0.66 | 0.94112 |
Target: 5'- cGGUGGUcaaauccuCGCGGUaCUCGCcGUcuuugaGCUCGAu -3' miRNA: 3'- -CCGCCG--------GCGUCAaGAGCG-CA------CGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 200940 | 0.66 | 0.945326 |
Target: 5'- gGGCGGCUuggcaCAGUggCUCauGCGcGCUCGGg -3' miRNA: 3'- -CCGCCGGc----GUCAa-GAG--CGCaCGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 256139 | 0.66 | 0.932097 |
Target: 5'- aGCGGCCGCGauGUUUUCGCucaucUUCGAu -3' miRNA: 3'- cCGCCGGCGU--CAAGAGCGcac--GAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 175508 | 0.67 | 0.91702 |
Target: 5'- aGCGGUCGUuccgAGUaUCUUGUaUGCUCGGa -3' miRNA: 3'- cCGCCGGCG----UCA-AGAGCGcACGAGCU- -5' |
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10313 | 5' | -58.7 | NC_002687.1 | + | 292649 | 0.66 | 0.942403 |
Target: 5'- aGCGGCCGCGGcguucguUUgauguaccacauucgCUCGCG-GCUgGAg -3' miRNA: 3'- cCGCCGGCGUC-------AA---------------GAGCGCaCGAgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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