miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10314 5' -55.6 NC_002687.1 + 223493 0.66 0.984167
Target:  5'- cGGUGGcgggggcGGGGGAA-GCCGUgGugGc- -3'
miRNA:   3'- uCCACC-------UCCCCUUaUGGCAgCugCac -5'
10314 5' -55.6 NC_002687.1 + 167713 0.66 0.982554
Target:  5'- aGGGUGGuguuGGuGGuGAUAUCGU-GACGUGu -3'
miRNA:   3'- -UCCACCu---CC-CC-UUAUGGCAgCUGCAC- -5'
10314 5' -55.6 NC_002687.1 + 330770 0.66 0.982554
Target:  5'- gGGGaGGAGGGGGAgaaucggggACCGgacgCGGCa-- -3'
miRNA:   3'- -UCCaCCUCCCCUUa--------UGGCa---GCUGcac -5'
10314 5' -55.6 NC_002687.1 + 201059 0.66 0.982554
Target:  5'- gGGGUGG-GGGGAucGCCGagGuCGg- -3'
miRNA:   3'- -UCCACCuCCCCUuaUGGCagCuGCac -5'
10314 5' -55.6 NC_002687.1 + 231705 0.67 0.971269
Target:  5'- uGGUGGuGGGGAGgcACCGaCGG-GUGa -3'
miRNA:   3'- uCCACCuCCCCUUa-UGGCaGCUgCAC- -5'
10314 5' -55.6 NC_002687.1 + 82886 0.68 0.959047
Target:  5'- cGGauuUGGAcGGaGAGUGCuUGUCGACGUGa -3'
miRNA:   3'- uCC---ACCUcCC-CUUAUG-GCAGCUGCAC- -5'
10314 5' -55.6 NC_002687.1 + 18647 0.68 0.955505
Target:  5'- aGGGgcaGGAGGGGcAAgagGCgG-CGGCGUGa -3'
miRNA:   3'- -UCCa--CCUCCCC-UUa--UGgCaGCUGCAC- -5'
10314 5' -55.6 NC_002687.1 + 224176 0.68 0.955505
Target:  5'- cGGUGGcGGGGGcAGUGCUGgUGGCGgUGg -3'
miRNA:   3'- uCCACC-UCCCC-UUAUGGCaGCUGC-AC- -5'
10314 5' -55.6 NC_002687.1 + 205550 0.69 0.929915
Target:  5'- cGGUGG-GuGGAucguUACCGUUGACGUa -3'
miRNA:   3'- uCCACCuCcCCUu---AUGGCAGCUGCAc -5'
10314 5' -55.6 NC_002687.1 + 309488 0.72 0.817274
Target:  5'- uGGUGGAcGGGGAGcuggugACgGUCGACGc- -3'
miRNA:   3'- uCCACCU-CCCCUUa-----UGgCAGCUGCac -5'
10314 5' -55.6 NC_002687.1 + 78242 1.09 0.008128
Target:  5'- gAGGUGGAGGGGAAUACCGUCGACGUGa -3'
miRNA:   3'- -UCCACCUCCCCUUAUGGCAGCUGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.