miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 3' -56.1 NC_002687.1 + 294726 0.66 0.975243
Target:  5'- -gGCCACCGAGaUCaUUuggcugcuccccgcGCGCgCGCCGCu -3'
miRNA:   3'- agUGGUGGUUCcAG-AA--------------CGCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 165581 0.66 0.973506
Target:  5'- gUCGaCACCGAGGUC-UGgGaCCAUCGg -3'
miRNA:   3'- -AGUgGUGGUUCCAGaACgC-GGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 44339 0.66 0.973506
Target:  5'- gCAUCGgguUCAGGGUCUccgucUGCGCCGgccuCCGUc -3'
miRNA:   3'- aGUGGU---GGUUCCAGA-----ACGCGGU----GGCG- -5'
10315 3' -56.1 NC_002687.1 + 270743 0.66 0.973506
Target:  5'- -aGCCugUAucGUCUgcucuuugGCGCCACgGCu -3'
miRNA:   3'- agUGGugGUucCAGAa-------CGCGGUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 227195 0.66 0.973506
Target:  5'- cCACCAUCAucGUUcaccgcucCGCCACCGCc -3'
miRNA:   3'- aGUGGUGGUucCAGaac-----GCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 204634 0.66 0.973506
Target:  5'- gUACCGCgCAcGG-CUUGUuCCACUGCa -3'
miRNA:   3'- aGUGGUG-GUuCCaGAACGcGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 310301 0.66 0.973506
Target:  5'- gUCAUUACUAGGGUUUagUGUGUgaACCGUg -3'
miRNA:   3'- -AGUGGUGGUUCCAGA--ACGCGg-UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 332017 0.66 0.973251
Target:  5'- gUCuCCcCCcAGGUCUugcaggcuggccaUGCGCCGCCu- -3'
miRNA:   3'- -AGuGGuGGuUCCAGA-------------ACGCGGUGGcg -5'
10315 3' -56.1 NC_002687.1 + 224568 0.67 0.970874
Target:  5'- aUCGCCACCGccac----CGCCACCGCc -3'
miRNA:   3'- -AGUGGUGGUuccagaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 211993 0.67 0.96806
Target:  5'- cCAUCGCCAAcGUCUUGCcGUUcgACUGCu -3'
miRNA:   3'- aGUGGUGGUUcCAGAACG-CGG--UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 162229 0.67 0.96806
Target:  5'- aUCACCgGCCAAGGaugUUUcGCcacuaCCACCGCc -3'
miRNA:   3'- -AGUGG-UGGUUCCa--GAA-CGc----GGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 226510 0.67 0.96806
Target:  5'- gCGCCGCU-GGGaCUgaugGCGCCGCUGg -3'
miRNA:   3'- aGUGGUGGuUCCaGAa---CGCGGUGGCg -5'
10315 3' -56.1 NC_002687.1 + 103018 0.67 0.96806
Target:  5'- -gGCCGCCAAGGcCacgaaggcUGCaGCCaagGCCGCc -3'
miRNA:   3'- agUGGUGGUUCCaGa-------ACG-CGG---UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 107745 0.67 0.96806
Target:  5'- gCAuCCGCCGcGGaCUUG-GCaCGCCGCg -3'
miRNA:   3'- aGU-GGUGGUuCCaGAACgCG-GUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 72898 0.67 0.96806
Target:  5'- aCACCGCCGAGca---GUGCCAgUGCg -3'
miRNA:   3'- aGUGGUGGUUCcagaaCGCGGUgGCG- -5'
10315 3' -56.1 NC_002687.1 + 308816 0.67 0.965058
Target:  5'- aUCGCCGCCA--GUCUc-CGCCGCaGCa -3'
miRNA:   3'- -AGUGGUGGUucCAGAacGCGGUGgCG- -5'
10315 3' -56.1 NC_002687.1 + 307258 0.67 0.965058
Target:  5'- cCACCACCAGcac----CGCCGCCGCc -3'
miRNA:   3'- aGUGGUGGUUccagaacGCGGUGGCG- -5'
10315 3' -56.1 NC_002687.1 + 213065 0.67 0.96412
Target:  5'- aUCACC-CCA---UCUUGCGCCgaucggaauuuuguACCGUa -3'
miRNA:   3'- -AGUGGuGGUuccAGAACGCGG--------------UGGCG- -5'
10315 3' -56.1 NC_002687.1 + 308266 0.67 0.961863
Target:  5'- cUCACCACCccagaccAGGUCUcuccgcGCGCCucCUGUc -3'
miRNA:   3'- -AGUGGUGGu------UCCAGAa-----CGCGGu-GGCG- -5'
10315 3' -56.1 NC_002687.1 + 209348 0.67 0.961863
Target:  5'- aCACCAaugucuCCcAGGUCUgaaaCGUUACCGCu -3'
miRNA:   3'- aGUGGU------GGuUCCAGAac--GCGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.