miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10315 5' -54.7 NC_002687.1 + 72554 0.66 0.991716
Target:  5'- uCGGCGGUGuGUCggCGGCGgcggCGUCGGc- -3'
miRNA:   3'- -GUCGUCAC-CGGa-GCUGUa---GCAGCUag -5'
10315 5' -54.7 NC_002687.1 + 261249 0.66 0.989367
Target:  5'- uCGGCA---GCCUCGucugccuCGUCGUUGAUCu -3'
miRNA:   3'- -GUCGUcacCGGAGCu------GUAGCAGCUAG- -5'
10315 5' -54.7 NC_002687.1 + 100528 0.66 0.988013
Target:  5'- uGGcCAGUGGCg-CcACGUCuGUCGAUCa -3'
miRNA:   3'- gUC-GUCACCGgaGcUGUAG-CAGCUAG- -5'
10315 5' -54.7 NC_002687.1 + 168676 0.66 0.988013
Target:  5'- aCAGCAGUuuGUC-CGAUAUCGUUGAa- -3'
miRNA:   3'- -GUCGUCAc-CGGaGCUGUAGCAGCUag -5'
10315 5' -54.7 NC_002687.1 + 116779 0.66 0.986529
Target:  5'- aCGGCA-UGGCCUUGACAUUcagaaGggGAUCg -3'
miRNA:   3'- -GUCGUcACCGGAGCUGUAG-----CagCUAG- -5'
10315 5' -54.7 NC_002687.1 + 328807 0.67 0.979151
Target:  5'- aCGGCugcuuGGUgGGCUUCGAgGUCGUCuuUCg -3'
miRNA:   3'- -GUCG-----UCA-CCGGAGCUgUAGCAGcuAG- -5'
10315 5' -54.7 NC_002687.1 + 103376 0.67 0.979151
Target:  5'- gCAGCcuucGUGGCCUUGGCGgccuuggUGUCGGc- -3'
miRNA:   3'- -GUCGu---CACCGGAGCUGUa------GCAGCUag -5'
10315 5' -54.7 NC_002687.1 + 10315 0.67 0.979151
Target:  5'- gCAGCAGUGGCggCGGCAguggCGgCGGc- -3'
miRNA:   3'- -GUCGUCACCGgaGCUGUa---GCaGCUag -5'
10315 5' -54.7 NC_002687.1 + 205478 0.68 0.966162
Target:  5'- uGGguGUGauGUgUUCGugGUCGUCGAUCa -3'
miRNA:   3'- gUCguCAC--CG-GAGCugUAGCAGCUAG- -5'
10315 5' -54.7 NC_002687.1 + 215719 0.68 0.963
Target:  5'- gAGCAGUcGCacgUGGCAUCGUCG-UCg -3'
miRNA:   3'- gUCGUCAcCGga-GCUGUAGCAGCuAG- -5'
10315 5' -54.7 NC_002687.1 + 29049 0.68 0.959638
Target:  5'- gGGaUGGUGGCCUUGGa---GUCGAUCg -3'
miRNA:   3'- gUC-GUCACCGGAGCUguagCAGCUAG- -5'
10315 5' -54.7 NC_002687.1 + 315994 0.69 0.956072
Target:  5'- aUAGCGGUGuCCUCGGCAgUCGUucCGAa- -3'
miRNA:   3'- -GUCGUCACcGGAGCUGU-AGCA--GCUag -5'
10315 5' -54.7 NC_002687.1 + 315221 0.69 0.955703
Target:  5'- aGGCcGUGGCCUUGGCuucuuuggccuugGUCGUCGu-- -3'
miRNA:   3'- gUCGuCACCGGAGCUG-------------UAGCAGCuag -5'
10315 5' -54.7 NC_002687.1 + 171052 0.69 0.94831
Target:  5'- gAGCGGguaGGCgUgGACGUCGUUGggCa -3'
miRNA:   3'- gUCGUCa--CCGgAgCUGUAGCAGCuaG- -5'
10315 5' -54.7 NC_002687.1 + 125143 0.69 0.944108
Target:  5'- uCGGCAucGGCCUCGGCAUCGcaugcgUGGUg -3'
miRNA:   3'- -GUCGUcaCCGGAGCUGUAGCa-----GCUAg -5'
10315 5' -54.7 NC_002687.1 + 263024 0.69 0.944108
Target:  5'- -uGCAG-GGCCgCGACGUCGUUGu-- -3'
miRNA:   3'- guCGUCaCCGGaGCUGUAGCAGCuag -5'
10315 5' -54.7 NC_002687.1 + 89560 0.71 0.896433
Target:  5'- cCAGCAGUccCCUCGuuAUCGUCGAg- -3'
miRNA:   3'- -GUCGUCAccGGAGCugUAGCAGCUag -5'
10315 5' -54.7 NC_002687.1 + 214988 0.72 0.862457
Target:  5'- cCGGCGG-GGCCgagggcggCGACAUCGUCa--- -3'
miRNA:   3'- -GUCGUCaCCGGa-------GCUGUAGCAGcuag -5'
10315 5' -54.7 NC_002687.1 + 97325 0.73 0.796747
Target:  5'- gCAGCAGggcuccggugcaGGCCUCGACAUCGacCGAc- -3'
miRNA:   3'- -GUCGUCa-----------CCGGAGCUGUAGCa-GCUag -5'
10315 5' -54.7 NC_002687.1 + 323238 0.79 0.484673
Target:  5'- aAGCGGUGGCCcccuUUG-UAUCGUCGAUCg -3'
miRNA:   3'- gUCGUCACCGG----AGCuGUAGCAGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.