miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10316 3' -47.5 NC_002687.1 + 83044 1.13 0.024056
Target:  5'- gCUCAUGUCACAUGCUACGCAAGAAGCc -3'
miRNA:   3'- -GAGUACAGUGUACGAUGCGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 311563 0.75 0.978538
Target:  5'- -gUAUGUCACGUGCgcACGCGGGGgugauacaacAGCa -3'
miRNA:   3'- gaGUACAGUGUACGa-UGCGUUCU----------UCG- -5'
10316 3' -47.5 NC_002687.1 + 195852 0.74 0.988023
Target:  5'- uUCAUGaagCACGaGCUGgGCGAGGAGUu -3'
miRNA:   3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 221443 0.73 0.992949
Target:  5'- uUCGUGaagCACGaGCUGgGCGAGGAGUu -3'
miRNA:   3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 20017 0.73 0.992949
Target:  5'- uUCGUGaagCACGaGCUGgGCGAGGAGUu -3'
miRNA:   3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 297305 0.73 0.994715
Target:  5'- -----cUCGCGUGCggcgcGCGCGGGGAGCa -3'
miRNA:   3'- gaguacAGUGUACGa----UGCGUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 34585 0.73 0.994715
Target:  5'- -cCAUG-CGCAUGUUGUGCAcgGGAGGCa -3'
miRNA:   3'- gaGUACaGUGUACGAUGCGU--UCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 39056 0.73 0.994715
Target:  5'- gCUCAUGUCGCccGCga-GCugcuGAAGCa -3'
miRNA:   3'- -GAGUACAGUGuaCGaugCGuu--CUUCG- -5'
10316 3' -47.5 NC_002687.1 + 135098 0.71 0.998843
Target:  5'- uCUCGU-UCACGUGCaGCGCGuuaAGAucGGCa -3'
miRNA:   3'- -GAGUAcAGUGUACGaUGCGU---UCU--UCG- -5'
10316 3' -47.5 NC_002687.1 + 137613 0.7 0.999415
Target:  5'- uCUCAUGUCgaACAcgcaccuguaccucgUGCUcgaguACGCcGGAGGCg -3'
miRNA:   3'- -GAGUACAG--UGU---------------ACGA-----UGCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 328558 0.7 0.999586
Target:  5'- aUCAUG-CACGaGCUgacucgGCGCAGGcAGCa -3'
miRNA:   3'- gAGUACaGUGUaCGA------UGCGUUCuUCG- -5'
10316 3' -47.5 NC_002687.1 + 97038 0.69 0.999792
Target:  5'- -aCGUGUCGgc-GCUACGCAAGGAc- -3'
miRNA:   3'- gaGUACAGUguaCGAUGCGUUCUUcg -5'
10316 3' -47.5 NC_002687.1 + 18571 0.69 0.999873
Target:  5'- uUCGUGUgCACGcgaugGCgGCGgGGGAAGCu -3'
miRNA:   3'- gAGUACA-GUGUa----CGaUGCgUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 10455 0.68 0.999957
Target:  5'- -cCGUGUCGgAUGCggggACGgAGGggGg -3'
miRNA:   3'- gaGUACAGUgUACGa---UGCgUUCuuCg -5'
10316 3' -47.5 NC_002687.1 + 79647 0.68 0.999968
Target:  5'- uCUgAUGUCGCG-GUgGCGCAAGAccuuGGUg -3'
miRNA:   3'- -GAgUACAGUGUaCGaUGCGUUCU----UCG- -5'
10316 3' -47.5 NC_002687.1 + 55507 0.68 0.999968
Target:  5'- -aCAUGaaaGCAUGCUACaauauuuaCGAGGAGCa -3'
miRNA:   3'- gaGUACag-UGUACGAUGc-------GUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 257777 0.67 0.999976
Target:  5'- uCUCGuUGUCAa--GCUGCGgagcuggcCGAGAGGCa -3'
miRNA:   3'- -GAGU-ACAGUguaCGAUGC--------GUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 87222 0.67 0.999982
Target:  5'- -cCGUGUUGCucgcUGgUGCGgGGGAGGCg -3'
miRNA:   3'- gaGUACAGUGu---ACgAUGCgUUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 82641 0.67 0.999982
Target:  5'- gUCAcuUCGCAUGUucugUACGUcAGAGGCc -3'
miRNA:   3'- gAGUacAGUGUACG----AUGCGuUCUUCG- -5'
10316 3' -47.5 NC_002687.1 + 76342 0.67 0.999987
Target:  5'- -gCGUGUCAaGUGCacugACuGCAAGAAGg -3'
miRNA:   3'- gaGUACAGUgUACGa---UG-CGUUCUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.