Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 10455 | 0.68 | 0.999957 |
Target: 5'- -cCGUGUCGgAUGCggggACGgAGGggGg -3' miRNA: 3'- gaGUACAGUgUACGa---UGCgUUCuuCg -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 18571 | 0.69 | 0.999873 |
Target: 5'- uUCGUGUgCACGcgaugGCgGCGgGGGAAGCu -3' miRNA: 3'- gAGUACA-GUGUa----CGaUGCgUUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 97038 | 0.69 | 0.999792 |
Target: 5'- -aCGUGUCGgc-GCUACGCAAGGAc- -3' miRNA: 3'- gaGUACAGUguaCGAUGCGUUCUUcg -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 328558 | 0.7 | 0.999586 |
Target: 5'- aUCAUG-CACGaGCUgacucgGCGCAGGcAGCa -3' miRNA: 3'- gAGUACaGUGUaCGA------UGCGUUCuUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 137613 | 0.7 | 0.999415 |
Target: 5'- uCUCAUGUCgaACAcgcaccuguaccucgUGCUcgaguACGCcGGAGGCg -3' miRNA: 3'- -GAGUACAG--UGU---------------ACGA-----UGCGuUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 135098 | 0.71 | 0.998843 |
Target: 5'- uCUCGU-UCACGUGCaGCGCGuuaAGAucGGCa -3' miRNA: 3'- -GAGUAcAGUGUACGaUGCGU---UCU--UCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 39056 | 0.73 | 0.994715 |
Target: 5'- gCUCAUGUCGCccGCga-GCugcuGAAGCa -3' miRNA: 3'- -GAGUACAGUGuaCGaugCGuu--CUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 34585 | 0.73 | 0.994715 |
Target: 5'- -cCAUG-CGCAUGUUGUGCAcgGGAGGCa -3' miRNA: 3'- gaGUACaGUGUACGAUGCGU--UCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 297305 | 0.73 | 0.994715 |
Target: 5'- -----cUCGCGUGCggcgcGCGCGGGGAGCa -3' miRNA: 3'- gaguacAGUGUACGa----UGCGUUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 20017 | 0.73 | 0.992949 |
Target: 5'- uUCGUGaagCACGaGCUGgGCGAGGAGUu -3' miRNA: 3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 221443 | 0.73 | 0.992949 |
Target: 5'- uUCGUGaagCACGaGCUGgGCGAGGAGUu -3' miRNA: 3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 195852 | 0.74 | 0.988023 |
Target: 5'- uUCAUGaagCACGaGCUGgGCGAGGAGUu -3' miRNA: 3'- gAGUACa--GUGUaCGAUgCGUUCUUCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 311563 | 0.75 | 0.978538 |
Target: 5'- -gUAUGUCACGUGCgcACGCGGGGgugauacaacAGCa -3' miRNA: 3'- gaGUACAGUGUACGa-UGCGUUCU----------UCG- -5' |
|||||||
10316 | 3' | -47.5 | NC_002687.1 | + | 83044 | 1.13 | 0.024056 |
Target: 5'- gCUCAUGUCACAUGCUACGCAAGAAGCc -3' miRNA: 3'- -GAGUACAGUGUACGAUGCGUUCUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home