Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10317 | 3' | -55.7 | NC_002687.1 | + | 200240 | 0.66 | 0.98764 |
Target: 5'- aCACCGACGaacugGGGUcucgacCCGACGGUu -3' miRNA: 3'- -GUGGCUGCcaca-UCCAa-----GGCUGCCAc -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 223460 | 0.66 | 0.988999 |
Target: 5'- gGgUGACGGUGgugcuggcggAGGUUCgGgauGCGGUGg -3' miRNA: 3'- gUgGCUGCCACa---------UCCAAGgC---UGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 264004 | 0.66 | 0.982778 |
Target: 5'- aGCCc-CGGUGUAGGaggaCUGACGGUc -3' miRNA: 3'- gUGGcuGCCACAUCCaa--GGCUGCCAc -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 101025 | 0.66 | 0.984536 |
Target: 5'- uCGCCGACGGUGaAGGcggCac-CGGUGu -3' miRNA: 3'- -GUGGCUGCCACaUCCaa-GgcuGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 308367 | 0.66 | 0.982778 |
Target: 5'- gACgGGCGGUGUAaag-CCGACGcGUGc -3' miRNA: 3'- gUGgCUGCCACAUccaaGGCUGC-CAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 97485 | 0.67 | 0.976596 |
Target: 5'- uCGCUGACGGUcggGUuaGGGUcUUGugGGUGa -3' miRNA: 3'- -GUGGCUGCCA---CA--UCCAaGGCugCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 85302 | 0.67 | 0.971657 |
Target: 5'- -cCCGugGGUcccGUGGGUcCCGuCGGUc -3' miRNA: 3'- guGGCugCCA---CAUCCAaGGCuGCCAc -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 226804 | 0.67 | 0.971657 |
Target: 5'- uGCCGGugcCGGUGgcGGUggcggUGGCGGUGg -3' miRNA: 3'- gUGGCU---GCCACauCCAag---GCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 224199 | 0.67 | 0.971657 |
Target: 5'- gCGgUGGCGGUGgcGGUggcggUGGCGGUGg -3' miRNA: 3'- -GUgGCUGCCACauCCAag---GCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 131020 | 0.67 | 0.980873 |
Target: 5'- uGCCGAugacaCGGUGUgcugcaagaagaAGGUUCUGACGa-- -3' miRNA: 3'- gUGGCU-----GCCACA------------UCCAAGGCUGCcac -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 226726 | 0.68 | 0.955761 |
Target: 5'- aCGCgGACGcGUGUggacgcaGGGUUCucucggcagCGGCGGUGg -3' miRNA: 3'- -GUGgCUGC-CACA-------UCCAAG---------GCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 307817 | 0.68 | 0.95243 |
Target: 5'- aCACUGAUGGggacGgcGGUgaCGGCGGUGa -3' miRNA: 3'- -GUGGCUGCCa---CauCCAagGCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 304747 | 0.7 | 0.920798 |
Target: 5'- aCACCGAUGGauuugaacgGUGGGgUCCGAagaaugcaGGUGg -3' miRNA: 3'- -GUGGCUGCCa--------CAUCCaAGGCUg-------CCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 224133 | 0.71 | 0.878917 |
Target: 5'- gCGCUGGCGGUGgcGGUggcgCUggcgcuggcgcuGGCGGUGg -3' miRNA: 3'- -GUGGCUGCCACauCCAa---GG------------CUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 130727 | 0.71 | 0.85799 |
Target: 5'- aGCUGGCGGUGguGGUggUGGCGGUGg -3' miRNA: 3'- gUGGCUGCCACauCCAagGCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 98157 | 0.72 | 0.843128 |
Target: 5'- uGCCGAUGGUGccGGUggugCCaGCGGUGc -3' miRNA: 3'- gUGGCUGCCACauCCAa---GGcUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 175076 | 0.74 | 0.732367 |
Target: 5'- -uCCGGCGGUugcaguaguuccGgcGGUUCCGGCGGUu -3' miRNA: 3'- guGGCUGCCA------------CauCCAAGGCUGCCAc -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 316046 | 0.75 | 0.704358 |
Target: 5'- gGCUGGCGGUGgugccgauGGUgCCGAUGGUGc -3' miRNA: 3'- gUGGCUGCCACau------CCAaGGCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 69048 | 0.75 | 0.713759 |
Target: 5'- uGgCGGCGGUGgcGGUggugUCGGCGGUGc -3' miRNA: 3'- gUgGCUGCCACauCCAa---GGCUGCCAC- -5' |
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10317 | 3' | -55.7 | NC_002687.1 | + | 84779 | 0.76 | 0.656696 |
Target: 5'- gUAUUGACGGUGgucguGGUUCCGuucACGGUGa -3' miRNA: 3'- -GUGGCUGCCACau---CCAAGGC---UGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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