miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10317 5' -54.7 NC_002687.1 + 117948 0.66 0.991715
Target:  5'- cACACCCggCGCggguguaggcgUCGCCaUCGCCGg-- -3'
miRNA:   3'- cUGUGGGa-GCG-----------AGUGGaAGUGGCaac -5'
10317 5' -54.7 NC_002687.1 + 263520 0.66 0.991715
Target:  5'- cGACGCCgCUCGUUCGauuaCUUCGgCGg-- -3'
miRNA:   3'- -CUGUGG-GAGCGAGUg---GAAGUgGCaac -5'
10317 5' -54.7 NC_002687.1 + 13806 0.66 0.990599
Target:  5'- cACGCCCUgCGCaCGUCUUC-CCGUUGc -3'
miRNA:   3'- cUGUGGGA-GCGaGUGGAAGuGGCAAC- -5'
10317 5' -54.7 NC_002687.1 + 279868 0.66 0.988974
Target:  5'- cGugGCCCUCggggaaaguacgugGUUCGCCguggCAuCCGUUGu -3'
miRNA:   3'- -CugUGGGAG--------------CGAGUGGaa--GU-GGCAAC- -5'
10317 5' -54.7 NC_002687.1 + 300665 0.66 0.988013
Target:  5'- cGACGCCgagaaGCUCACCUggACCGa-- -3'
miRNA:   3'- -CUGUGGgag--CGAGUGGAagUGGCaac -5'
10317 5' -54.7 NC_002687.1 + 129349 0.66 0.988013
Target:  5'- cGugACaacgCGCUCugCUUCcCCGUUGc -3'
miRNA:   3'- -CugUGgga-GCGAGugGAAGuGGCAAC- -5'
10317 5' -54.7 NC_002687.1 + 227275 0.66 0.986684
Target:  5'- cGACGCCCgcgaaucuugccgggCGUUUACCcUUGCUGUUGu -3'
miRNA:   3'- -CUGUGGGa--------------GCGAGUGGaAGUGGCAAC- -5'
10317 5' -54.7 NC_002687.1 + 207207 0.66 0.986529
Target:  5'- aGACACCUacuUUGCUgGCCUcuUCGCCa--- -3'
miRNA:   3'- -CUGUGGG---AGCGAgUGGA--AGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 10541 0.67 0.984909
Target:  5'- gGACGuuCUCGCUCggGCgaUCGCCGUc- -3'
miRNA:   3'- -CUGUggGAGCGAG--UGgaAGUGGCAac -5'
10317 5' -54.7 NC_002687.1 + 291671 0.67 0.984909
Target:  5'- cGACAgCCUCGCggcCGCUgggCACCGc-- -3'
miRNA:   3'- -CUGUgGGAGCGa--GUGGaa-GUGGCaac -5'
10317 5' -54.7 NC_002687.1 + 118489 0.67 0.979151
Target:  5'- aACGCCCUagccCGUUCACUgaaCGCCGggGg -3'
miRNA:   3'- cUGUGGGA----GCGAGUGGaa-GUGGCaaC- -5'
10317 5' -54.7 NC_002687.1 + 15081 0.68 0.963
Target:  5'- aGCGCUCUCGUUCcCCUUUACCc--- -3'
miRNA:   3'- cUGUGGGAGCGAGuGGAAGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 100076 0.68 0.963
Target:  5'- aGACGCUCgugagcUGUUCGCCUUCACCu--- -3'
miRNA:   3'- -CUGUGGGa-----GCGAGUGGAAGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 14223 0.68 0.963
Target:  5'- aGCGCUCUCGUUCcCCUUUACCc--- -3'
miRNA:   3'- cUGUGGGAGCGAGuGGAAGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 15939 0.68 0.963
Target:  5'- aGCGCUCUCGUUCcCCUUUACCc--- -3'
miRNA:   3'- cUGUGGGAGCGAGuGGAAGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 211532 0.69 0.952296
Target:  5'- cGAUGCCCUUGCccuUCACaCUcUCGCCGUc- -3'
miRNA:   3'- -CUGUGGGAGCG---AGUG-GA-AGUGGCAac -5'
10317 5' -54.7 NC_002687.1 + 137562 0.69 0.944108
Target:  5'- uGAUACCCUCGCUCG--UUC-CCGUc- -3'
miRNA:   3'- -CUGUGGGAGCGAGUggAAGuGGCAac -5'
10317 5' -54.7 NC_002687.1 + 305334 0.7 0.930194
Target:  5'- cGACACCUUC-UUCGCUUUCACCa--- -3'
miRNA:   3'- -CUGUGGGAGcGAGUGGAAGUGGcaac -5'
10317 5' -54.7 NC_002687.1 + 206359 0.7 0.919817
Target:  5'- gGACACCC-CGCUCgagggguacaccACCgaCACCGUg- -3'
miRNA:   3'- -CUGUGGGaGCGAG------------UGGaaGUGGCAac -5'
10317 5' -54.7 NC_002687.1 + 307867 0.7 0.919817
Target:  5'- uGGCGCCCUCGgUCACUUUaGCUGa-- -3'
miRNA:   3'- -CUGUGGGAGCgAGUGGAAgUGGCaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.