Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10318 | 3' | -45.6 | NC_002687.1 | + | 55619 | 0.66 | 1 |
Target: 5'- ------gGGACACGUcgCGGCAAAUCu -3' miRNA: 3'- acuacagCCUGUGCAa-GUUGUUUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 86272 | 0.66 | 1 |
Target: 5'- cGAUGUaGGAgACGgacgUCAcuccgagcgaugACAGGUCGa -3' miRNA: 3'- aCUACAgCCUgUGCa---AGU------------UGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 298942 | 0.66 | 1 |
Target: 5'- uUGAUGgaUCGGAgCGCGUUCugUAGGaCGg -3' miRNA: 3'- -ACUAC--AGCCU-GUGCAAGuuGUUUaGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 226968 | 0.68 | 0.999999 |
Target: 5'- gUGGUGUCGGugGCuccgaAACuGAAUCGg -3' miRNA: 3'- -ACUACAGCCugUGcaag-UUG-UUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 158157 | 0.68 | 0.999999 |
Target: 5'- cUGGUGUUGGcguucuuCGCGUcgcUCGACcAGAUCGu -3' miRNA: 3'- -ACUACAGCCu------GUGCA---AGUUG-UUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 133417 | 0.68 | 0.999999 |
Target: 5'- cGAgagUGGACAC-UUCGACGAGUUGu -3' miRNA: 3'- aCUacaGCCUGUGcAAGUUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 100848 | 0.69 | 0.999998 |
Target: 5'- cUGAcggGUCGGAUGucgauucaaccguCGUucUCGACAAGUCGg -3' miRNA: 3'- -ACUa--CAGCCUGU-------------GCA--AGUUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 240556 | 0.69 | 0.999997 |
Target: 5'- -aAUGUaaGACAUGUUCGGCcGAUCGc -3' miRNA: 3'- acUACAgcCUGUGCAAGUUGuUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 263621 | 0.69 | 0.999994 |
Target: 5'- cUGAUGUCGGGCGuCGauauucccCGGCGAuUCGa -3' miRNA: 3'- -ACUACAGCCUGU-GCaa------GUUGUUuAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 284378 | 0.7 | 0.999984 |
Target: 5'- aGAgg-CGG-CGCGUUCAGCAGgugcAUCGa -3' miRNA: 3'- aCUacaGCCuGUGCAAGUUGUU----UAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 279184 | 0.7 | 0.999978 |
Target: 5'- cGGUGcCGGAaGCGUUUgggGACAAGUUGa -3' miRNA: 3'- aCUACaGCCUgUGCAAG---UUGUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 132558 | 0.71 | 0.999947 |
Target: 5'- -cAUGUCGGACAC-UUCAgGCAAAUUu -3' miRNA: 3'- acUACAGCCUGUGcAAGU-UGUUUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 29099 | 0.71 | 0.99993 |
Target: 5'- cGAUGUCcGACACGUugUUGACAAuugCGg -3' miRNA: 3'- aCUACAGcCUGUGCA--AGUUGUUua-GC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 257951 | 0.71 | 0.999909 |
Target: 5'- cUGGUGUCuGACAUGgUCGACAuGGUCa -3' miRNA: 3'- -ACUACAGcCUGUGCaAGUUGU-UUAGc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 70569 | 0.72 | 0.999848 |
Target: 5'- cGAUGUguuuccUGGAUAUGUUCAACcccGUCGa -3' miRNA: 3'- aCUACA------GCCUGUGCAAGUUGuu-UAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 102849 | 0.72 | 0.999753 |
Target: 5'- cGAcGUCGGACGCuaGUUCGACGAc--- -3' miRNA: 3'- aCUaCAGCCUGUG--CAAGUUGUUuagc -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 200743 | 0.73 | 0.999611 |
Target: 5'- cUGAgGUCGGGCGCGgaCGAgaGAAUCGc -3' miRNA: 3'- -ACUaCAGCCUGUGCaaGUUg-UUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 250124 | 0.73 | 0.999611 |
Target: 5'- cGGUGgCGGcaGCGUUCAAgGAAUCGa -3' miRNA: 3'- aCUACaGCCugUGCAAGUUgUUUAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 39433 | 0.73 | 0.999264 |
Target: 5'- cGAUGUCGGcgcCAUGcUUCAGCAGcUCGc -3' miRNA: 3'- aCUACAGCCu--GUGC-AAGUUGUUuAGC- -5' |
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10318 | 3' | -45.6 | NC_002687.1 | + | 58042 | 0.74 | 0.998906 |
Target: 5'- gGGUGUCGGGCGCGUugUUGugAGAaaaucUCGg -3' miRNA: 3'- aCUACAGCCUGUGCA--AGUugUUU-----AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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