miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10318 5' -58.2 NC_002687.1 + 260169 0.66 0.944373
Target:  5'- uGUCGGCGcUGCCCGCCu---UGGCc- -3'
miRNA:   3'- -CAGCUGCaACGGGUGGugccACCGua -5'
10318 5' -58.2 NC_002687.1 + 254360 0.66 0.940044
Target:  5'- gGUCGGCGgUGaCCUcgcaGCCACGGcaaccugGGCAUu -3'
miRNA:   3'- -CAGCUGCaAC-GGG----UGGUGCCa------CCGUA- -5'
10318 5' -58.2 NC_002687.1 + 41784 0.66 0.935504
Target:  5'- -cCGACGUUaucaGCCCuuCCAUGGacGGCGUg -3'
miRNA:   3'- caGCUGCAA----CGGGu-GGUGCCa-CCGUA- -5'
10318 5' -58.2 NC_002687.1 + 61048 0.66 0.930751
Target:  5'- --aGACGUcUGCCgCAUCAUGG-GGCAc -3'
miRNA:   3'- cagCUGCA-ACGG-GUGGUGCCaCCGUa -5'
10318 5' -58.2 NC_002687.1 + 69036 0.66 0.925785
Target:  5'- uGUUGGCGaUGgUgGCgGCGGUGGCGg -3'
miRNA:   3'- -CAGCUGCaACgGgUGgUGCCACCGUa -5'
10318 5' -58.2 NC_002687.1 + 238482 0.66 0.925785
Target:  5'- aGUCGGCGUgcgcuuccGCUCugCACGuucuUGGCAUg -3'
miRNA:   3'- -CAGCUGCAa-------CGGGugGUGCc---ACCGUA- -5'
10318 5' -58.2 NC_002687.1 + 72553 0.67 0.920606
Target:  5'- cUCGGCGgugUGUCgGCgGCGGcGGCGUc -3'
miRNA:   3'- cAGCUGCa--ACGGgUGgUGCCaCCGUA- -5'
10318 5' -58.2 NC_002687.1 + 41912 0.67 0.915213
Target:  5'- --gGACGUcauugGCCCuuCCAUGGaUGGCGUg -3'
miRNA:   3'- cagCUGCAa----CGGGu-GGUGCC-ACCGUA- -5'
10318 5' -58.2 NC_002687.1 + 161496 0.67 0.909609
Target:  5'- cUCGAUGUUGUUCACCACGaGaUGGa-- -3'
miRNA:   3'- cAGCUGCAACGGGUGGUGC-C-ACCgua -5'
10318 5' -58.2 NC_002687.1 + 280952 0.67 0.89777
Target:  5'- cGUCGGCGggG---GCCugGGUGGCGg -3'
miRNA:   3'- -CAGCUGCaaCgggUGGugCCACCGUa -5'
10318 5' -58.2 NC_002687.1 + 135337 0.67 0.89154
Target:  5'- --aGACGUUGCCgugGCCGCGGUcGaGCAc -3'
miRNA:   3'- cagCUGCAACGGg--UGGUGCCA-C-CGUa -5'
10318 5' -58.2 NC_002687.1 + 155154 0.68 0.871646
Target:  5'- -aCGACGcggUGUCUACgGCGGUGuGCAc -3'
miRNA:   3'- caGCUGCa--ACGGGUGgUGCCAC-CGUa -5'
10318 5' -58.2 NC_002687.1 + 170155 0.69 0.842464
Target:  5'- cGUCGGCGUcGgCCACgaCACGGUGGa-- -3'
miRNA:   3'- -CAGCUGCAaCgGGUG--GUGCCACCgua -5'
10318 5' -58.2 NC_002687.1 + 212333 0.71 0.730124
Target:  5'- cUCGGCGUcuucggGCUCGCCACcgucgacagcgguGGUGGCAg -3'
miRNA:   3'- cAGCUGCAa-----CGGGUGGUG-------------CCACCGUa -5'
10318 5' -58.2 NC_002687.1 + 262671 0.74 0.568314
Target:  5'- -aCGACGUcgcgGCCCugCACGGgucgUGGCGUu -3'
miRNA:   3'- caGCUGCAa---CGGGugGUGCC----ACCGUA- -5'
10318 5' -58.2 NC_002687.1 + 84523 1.05 0.007006
Target:  5'- cGUCGACGUUGCCCACCACGGUGGCAUc -3'
miRNA:   3'- -CAGCUGCAACGGGUGGUGCCACCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.