Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10319 | 3' | -54.3 | NC_002687.1 | + | 195811 | 0.68 | 0.974439 |
Target: 5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3' miRNA: 3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 19976 | 0.68 | 0.974439 |
Target: 5'- cUCcGCCAGGUUGUAgAGCuuCGuCGc -3' miRNA: 3'- -AGaCGGUCCAACAUgUCGugGCuGCc -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 72549 | 0.68 | 0.971854 |
Target: 5'- aCUGCUcGGcggUGUGuCGGCGgCGGCGGc -3' miRNA: 3'- aGACGGuCCa--ACAU-GUCGUgGCUGCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 283139 | 0.69 | 0.965825 |
Target: 5'- aUCUGCUgcuuaccuugguGGGUUGUcccuucgGCAGCAuCCGaaGCGGc -3' miRNA: 3'- -AGACGG------------UCCAACA-------UGUCGU-GGC--UGCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 290944 | 0.69 | 0.956082 |
Target: 5'- --aGUCAGGcggGcUACAGCACCGcguACGGg -3' miRNA: 3'- agaCGGUCCaa-C-AUGUCGUGGC---UGCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 285771 | 0.7 | 0.948356 |
Target: 5'- cCUGCCAGGcgGcuuccucCAGCACCGAacguacacCGGa -3' miRNA: 3'- aGACGGUCCaaCau-----GUCGUGGCU--------GCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 216226 | 0.71 | 0.908826 |
Target: 5'- gUUGCCccGGGUUGUGCAGUcuuucgguGCCGAUa- -3' miRNA: 3'- aGACGG--UCCAACAUGUCG--------UGGCUGcc -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 58741 | 0.72 | 0.896772 |
Target: 5'- uUCUGCUuguugAGGUaGUACAGCAgcUCGGCGa -3' miRNA: 3'- -AGACGG-----UCCAaCAUGUCGU--GGCUGCc -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 280927 | 0.74 | 0.80793 |
Target: 5'- -aUGCCGGGggcccgUGUugaaGCAGCGUCGGCGGg -3' miRNA: 3'- agACGGUCCa-----ACA----UGUCGUGGCUGCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 203539 | 0.74 | 0.782 |
Target: 5'- -gUGCuCAGGUcGUAU-GCACCGGCGGc -3' miRNA: 3'- agACG-GUCCAaCAUGuCGUGGCUGCC- -5' |
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10319 | 3' | -54.3 | NC_002687.1 | + | 84921 | 1.1 | 0.008225 |
Target: 5'- gUCUGCCAGGUUGUACAGCACCGACGGc -3' miRNA: 3'- -AGACGGUCCAACAUGUCGUGGCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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