miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10320 5' -62 NC_002687.1 + 260289 0.66 0.855933
Target:  5'- uGUGGCCCC--AGGGCUCcuuuuuuUGGGGuGCUc -3'
miRNA:   3'- cCGCCGGGGaaUCCUGGG-------ACUCC-CGG- -5'
10320 5' -62 NC_002687.1 + 204540 0.66 0.831746
Target:  5'- cGGCaccGCCCCcgcgcugauauGcGACCC-GAGGGCCc -3'
miRNA:   3'- -CCGc--CGGGGaau--------C-CUGGGaCUCCCGG- -5'
10320 5' -62 NC_002687.1 + 128574 0.66 0.827167
Target:  5'- aGGCGGUCCCaaagAGuGGCCau--GGGUCa -3'
miRNA:   3'- -CCGCCGGGGaa--UC-CUGGgacuCCCGG- -5'
10320 5' -62 NC_002687.1 + 84652 0.66 0.827167
Target:  5'- cGGCcaGGUCCCcgAGGACaaagucgaUCUGuGGGUCa -3'
miRNA:   3'- -CCG--CCGGGGaaUCCUG--------GGACuCCCGG- -5'
10320 5' -62 NC_002687.1 + 99412 0.66 0.819418
Target:  5'- --aGGUCuCCgugccgUGGGugCCggucaUGAGGGCCa -3'
miRNA:   3'- ccgCCGG-GGa-----AUCCugGG-----ACUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85500 0.67 0.811529
Target:  5'- cGCGGCCUCccuGGACCCgcuGGucccGCCg -3'
miRNA:   3'- cCGCCGGGGaauCCUGGGacuCC----CGG- -5'
10320 5' -62 NC_002687.1 + 203520 0.67 0.809136
Target:  5'- cGGCGGCCCCaUAGucggaGACgCUGuAGuucgaugcaacguuGGCCa -3'
miRNA:   3'- -CCGCCGGGGaAUC-----CUGgGAC-UC--------------CCGG- -5'
10320 5' -62 NC_002687.1 + 86066 0.67 0.795353
Target:  5'- cGgGGCCag-UGGGGCCagcGGGGCCa -3'
miRNA:   3'- cCgCCGGggaAUCCUGGgacUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85715 0.67 0.776998
Target:  5'- cGGUGGCaCCCgccggaccgacGGGACCCgc-GGGaCCg -3'
miRNA:   3'- -CCGCCG-GGGaa---------UCCUGGGacuCCC-GG- -5'
10320 5' -62 NC_002687.1 + 205442 0.68 0.752897
Target:  5'- uGGCGGUgUCgUGGGACaCgCUGuGGGCa -3'
miRNA:   3'- -CCGCCGgGGaAUCCUG-G-GACuCCCGg -5'
10320 5' -62 NC_002687.1 + 103390 0.68 0.726312
Target:  5'- uGGCGGCCuuggcugcagCCUUcGuGGCCUUGGcGGCCu -3'
miRNA:   3'- -CCGCCGG----------GGAAuC-CUGGGACUcCCGG- -5'
10320 5' -62 NC_002687.1 + 85250 0.69 0.699124
Target:  5'- cGCGGgaCCCUc-GGGCCCUaAGGGUCc -3'
miRNA:   3'- cCGCCg-GGGAauCCUGGGAcUCCCGG- -5'
10320 5' -62 NC_002687.1 + 100825 0.69 0.671516
Target:  5'- cGGCGGUCUUguuaucGGuaGCCCUGAcGGGUCg -3'
miRNA:   3'- -CCGCCGGGGaau---CC--UGGGACU-CCCGG- -5'
10320 5' -62 NC_002687.1 + 282408 0.7 0.652967
Target:  5'- -aCGGCCCCUgcc-GCCgCUGAGGGUa -3'
miRNA:   3'- ccGCCGGGGAauccUGG-GACUCCCGg -5'
10320 5' -62 NC_002687.1 + 85545 0.7 0.625056
Target:  5'- cGUGGCCCUccAGGAgCC-GAGGGaCCc -3'
miRNA:   3'- cCGCCGGGGaaUCCUgGGaCUCCC-GG- -5'
10320 5' -62 NC_002687.1 + 252578 0.7 0.597185
Target:  5'- uGGC-GUCCC--GGGACCgaGAGGGUCc -3'
miRNA:   3'- -CCGcCGGGGaaUCCUGGgaCUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85996 0.72 0.515244
Target:  5'- aGCuGGCCCCUgaauaccuuuGGcACCaaGAGGGCCg -3'
miRNA:   3'- cCG-CCGGGGAau--------CC-UGGgaCUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85915 0.74 0.422009
Target:  5'- --gGGUCCUUUGGGuCCCUcggcuccugGAGGGCCa -3'
miRNA:   3'- ccgCCGGGGAAUCCuGGGA---------CUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85615 0.81 0.153731
Target:  5'- aGCGGgaCCCUUAGGGCCC-GAGGGUCc -3'
miRNA:   3'- cCGCCg-GGGAAUCCUGGGaCUCCCGG- -5'
10320 5' -62 NC_002687.1 + 85792 1.12 0.001363
Target:  5'- cGGCGGCCCCUUAGGACCCUGAGGGCCc -3'
miRNA:   3'- -CCGCCGGGGAAUCCUGGGACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.