miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 3' -62.3 NC_002687.1 + 312211 0.7 0.623164
Target:  5'- gGcGGAgCAGCGGGAUCGGUcaccaagguacucggGGGACUc -3'
miRNA:   3'- gC-CCUgGUCGCCCUGGUCA---------------CCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 86183 0.7 0.619448
Target:  5'- gCGGGACCAGCGGGACCAn-------- -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUcacccuggu -5'
10321 3' -62.3 NC_002687.1 + 217471 0.7 0.610163
Target:  5'- gGGGACUcGUGGGAgCAcucGUGGGAgCCGg -3'
miRNA:   3'- gCCCUGGuCGCCCUgGU---CACCCU-GGU- -5'
10321 3' -62.3 NC_002687.1 + 87471 0.7 0.600892
Target:  5'- uCGGGGgC-GUGGGACCGGUGuGGuuCCAu -3'
miRNA:   3'- -GCCCUgGuCGCCCUGGUCAC-CCu-GGU- -5'
10321 3' -62.3 NC_002687.1 + 93238 0.71 0.545846
Target:  5'- uGGGAUCAGCGGaACUucucaGGGACCAa -3'
miRNA:   3'- gCCCUGGUCGCCcUGGuca--CCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 18638 0.72 0.518909
Target:  5'- aGGGGCaagaGGCGGcGGCgugaguGUGGGACCAg -3'
miRNA:   3'- gCCCUGg---UCGCC-CUGgu----CACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 215264 0.72 0.518909
Target:  5'- gGGGugCAGCGGGucaAUCGGUGGcuCCAu -3'
miRNA:   3'- gCCCugGUCGCCC---UGGUCACCcuGGU- -5'
10321 3' -62.3 NC_002687.1 + 85668 0.72 0.492514
Target:  5'- aCGGGACCGaCGGGACCcAc-GGGACCc -3'
miRNA:   3'- -GCCCUGGUcGCCCUGG-UcaCCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 316201 0.74 0.378861
Target:  5'- uCGGGugCGGCGGGAUCuucGGGugCGg -3'
miRNA:   3'- -GCCCugGUCGCCCUGGucaCCCugGU- -5'
10321 3' -62.3 NC_002687.1 + 85808 0.74 0.371437
Target:  5'- gGGGACCGGUGGGACCc--GGcGGCCc -3'
miRNA:   3'- gCCCUGGUCGCCCUGGucaCC-CUGGu -5'
10321 3' -62.3 NC_002687.1 + 223377 0.76 0.318321
Target:  5'- uGGGAgCAGUGGGAUCAGUGcguggucgaaucgauGGGCCGu -3'
miRNA:   3'- gCCCUgGUCGCCCUGGUCAC---------------CCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 85641 0.78 0.24971
Target:  5'- aCGGGACCAGgGaggccuuguGGGCCAGcGGGACCc -3'
miRNA:   3'- -GCCCUGGUCgC---------CCUGGUCaCCCUGGu -5'
10321 3' -62.3 NC_002687.1 + 226552 0.8 0.170537
Target:  5'- uGGGACCGcUGGGACCGcUGGGACCGa -3'
miRNA:   3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 226579 0.82 0.123019
Target:  5'- uGGGACCGaUGGGACCAaUGGGACCAa -3'
miRNA:   3'- gCCCUGGUcGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 85863 0.85 0.090188
Target:  5'- gCGGGACCAGCGGGuCCAG-GGaGGCCGc -3'
miRNA:   3'- -GCCCUGGUCGCCCuGGUCaCC-CUGGU- -5'
10321 3' -62.3 NC_002687.1 + 85695 0.89 0.046656
Target:  5'- aCGGGACCcGCGGGACCGaUGGGACCGa -3'
miRNA:   3'- -GCCCUGGuCGCCCUGGUcACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86210 1.01 0.007339
Target:  5'- aCGGGACCAGCGGGACCAGcGGGACCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCaCCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86076 1.05 0.003812
Target:  5'- gCGGGGCCAGCGGGGCCAGUGGGGCCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5'
10321 3' -62.3 NC_002687.1 + 86165 1.08 0.00242
Target:  5'- gCGGGACCAGCGGGACCAGUGGGACCAg -3'
miRNA:   3'- -GCCCUGGUCGCCCUGGUCACCCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.