miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 5' -55.2 NC_002687.1 + 276066 0.67 0.972771
Target:  5'- -aUGGcuuGCCUaUGGCGCCaagGGCGCUg -3'
miRNA:   3'- agACU---UGGGaACCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 92563 0.67 0.972771
Target:  5'- cUUGuacACCUUUGGUACCUUUGGUgguGCa -3'
miRNA:   3'- aGACu--UGGGAACCGUGGGAACCG---UGg -5'
10321 5' -55.2 NC_002687.1 + 303184 0.67 0.972771
Target:  5'- gCUGuagaAGCCCUcgucGGCccGCgUUUGGCACCa -3'
miRNA:   3'- aGAC----UUGGGAa---CCG--UGgGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 87533 0.67 0.970059
Target:  5'- gUCgGaAAUCCUccaagGGCGCCaagGGCGCCa -3'
miRNA:   3'- -AGaC-UUGGGAa----CCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 200428 0.67 0.96716
Target:  5'- --cGAugCCgUGcGCGCCCUcGuGCGCCu -3'
miRNA:   3'- agaCUugGGaAC-CGUGGGAaC-CGUGG- -5'
10321 5' -55.2 NC_002687.1 + 210321 0.68 0.964068
Target:  5'- aUCUGcACCaccGGCACCacgGGCACa -3'
miRNA:   3'- -AGACuUGGgaaCCGUGGgaaCCGUGg -5'
10321 5' -55.2 NC_002687.1 + 90851 0.68 0.964068
Target:  5'- uUCagGAGCCCUUaugaucGGUGCCaagcguacUGGCGCCg -3'
miRNA:   3'- -AGa-CUUGGGAA------CCGUGGga------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 80970 0.68 0.960778
Target:  5'- --cGAccaccGCCa-UGGCACCCUUGGacuCGCCu -3'
miRNA:   3'- agaCU-----UGGgaACCGUGGGAACC---GUGG- -5'
10321 5' -55.2 NC_002687.1 + 86493 0.68 0.960778
Target:  5'- --cGuAGCCa-UGGCACCCaUGGgGCCg -3'
miRNA:   3'- agaC-UUGGgaACCGUGGGaACCgUGG- -5'
10321 5' -55.2 NC_002687.1 + 85919 0.68 0.953585
Target:  5'- cUUUGGGuCCUUUGGguCCCUcGGCuCCu -3'
miRNA:   3'- -AGACUU-GGGAACCguGGGAaCCGuGG- -5'
10321 5' -55.2 NC_002687.1 + 91248 0.68 0.949273
Target:  5'- cCUGGuaccaacACCCcaauuccGGCGCCaguacgCUUGGCACCg -3'
miRNA:   3'- aGACU-------UGGGaa-----CCGUGG------GAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 240171 0.69 0.945553
Target:  5'- gUCUGGugaaACCCUUGGaACCCUccuUGGaauCCu -3'
miRNA:   3'- -AGACU----UGGGAACCgUGGGA---ACCgu-GG- -5'
10321 5' -55.2 NC_002687.1 + 313894 0.69 0.942976
Target:  5'- cUUUGAGCCagCUuguccgcuuuuaguuUGGCACCCgcGGCGCg -3'
miRNA:   3'- -AGACUUGG--GA---------------ACCGUGGGaaCCGUGg -5'
10321 5' -55.2 NC_002687.1 + 68412 0.69 0.936658
Target:  5'- --cGaAACCCUgauggUGGCACCC--GGUGCCg -3'
miRNA:   3'- agaC-UUGGGA-----ACCGUGGGaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 85509 0.69 0.936658
Target:  5'- cCUGGACCCgcUGGU-CCCgccGGCGCg -3'
miRNA:   3'- aGACUUGGGa-ACCGuGGGaa-CCGUGg -5'
10321 5' -55.2 NC_002687.1 + 87947 0.69 0.931882
Target:  5'- cCUGGAucccuucgauCCCUUGGaGCCCUUGGaucCCu -3'
miRNA:   3'- aGACUU----------GGGAACCgUGGGAACCgu-GG- -5'
10321 5' -55.2 NC_002687.1 + 269889 0.69 0.931393
Target:  5'- --cGAACagccacgCCUUGGCACUggUGGUGCCa -3'
miRNA:   3'- agaCUUG-------GGAACCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 134058 0.69 0.926887
Target:  5'- --gGAAaaaCCgc-GCGCUCUUGGCACCg -3'
miRNA:   3'- agaCUUg--GGaacCGUGGGAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 77108 0.7 0.916236
Target:  5'- gUCgGGGCCCUcgGGaCACCCUUGGgGa- -3'
miRNA:   3'- -AGaCUUGGGAa-CC-GUGGGAACCgUgg -5'
10321 5' -55.2 NC_002687.1 + 160319 0.7 0.90471
Target:  5'- aCUG-GCCUUggcggcGGCugCCUUGGcCGCCc -3'
miRNA:   3'- aGACuUGGGAa-----CCGugGGAACC-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.