miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10322 3' -56.3 NC_002687.1 + 81203 0.68 0.945672
Target:  5'- cUCGGgcaCCGCU--ACGCCGGCAACGg -3'
miRNA:   3'- uGGCUa--GGUGGguUGCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 88567 0.68 0.941377
Target:  5'- cGCCGAacucgCgGCCC-GCGCCAGCG-CGc -3'
miRNA:   3'- -UGGCUa----GgUGGGuUGCGGUCGUuGCa -5'
10322 3' -56.3 NC_002687.1 + 332512 0.68 0.941377
Target:  5'- -gUGAUCCACCCuuuGCGgCuGCAGCa- -3'
miRNA:   3'- ugGCUAGGUGGGu--UGCgGuCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 9582 0.68 0.938698
Target:  5'- uGCCGAUgUAgCCGAUGCgggccacaccuuuacCAGCGGCGUa -3'
miRNA:   3'- -UGGCUAgGUgGGUUGCG---------------GUCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 85886 0.68 0.936868
Target:  5'- gGCCacguGGUCCugCC-GCGCCGGCGggaccaGCGg -3'
miRNA:   3'- -UGG----CUAGGugGGuUGCGGUCGU------UGCa -5'
10322 3' -56.3 NC_002687.1 + 95124 0.69 0.916675
Target:  5'- cCCGAUCCACCCu-CGCgCAGau-CGg -3'
miRNA:   3'- uGGCUAGGUGGGuuGCG-GUCguuGCa -5'
10322 3' -56.3 NC_002687.1 + 298428 0.69 0.911087
Target:  5'- cCCGGUCCAagCAcGCGCgCGGCGGCGg -3'
miRNA:   3'- uGGCUAGGUggGU-UGCG-GUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 224485 0.69 0.911087
Target:  5'- cACCG--CCACcgCCAGCGCCAGCGccaccgccaccGCGUc -3'
miRNA:   3'- -UGGCuaGGUG--GGUUGCGGUCGU-----------UGCA- -5'
10322 3' -56.3 NC_002687.1 + 330133 0.69 0.899271
Target:  5'- cACCGggCaCGCCuCGGCG-CAGCAGCGa -3'
miRNA:   3'- -UGGCuaG-GUGG-GUUGCgGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 157287 0.69 0.893047
Target:  5'- cGCCGAcgaaaugaauUCgCACUCAACGCUAaCAGCGUg -3'
miRNA:   3'- -UGGCU----------AG-GUGGGUUGCGGUcGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 224515 0.69 0.886616
Target:  5'- cACCG--CCACcgCCAGCGCCAGCGccaGCGc -3'
miRNA:   3'- -UGGCuaGGUG--GGUUGCGGUCGU---UGCa -5'
10322 3' -56.3 NC_002687.1 + 304799 0.7 0.866118
Target:  5'- cGCCGAaguacgUCCGCCCAaccgACGCCA-CAACu- -3'
miRNA:   3'- -UGGCU------AGGUGGGU----UGCGGUcGUUGca -5'
10322 3' -56.3 NC_002687.1 + 61016 0.71 0.843908
Target:  5'- uGCCuGAUCCACCUGAa--CGGCAACGg -3'
miRNA:   3'- -UGG-CUAGGUGGGUUgcgGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 238308 0.71 0.811889
Target:  5'- uCCGAUCUcgGCCCGACGCUuGuCGGCGa -3'
miRNA:   3'- uGGCUAGG--UGGGUUGCGGuC-GUUGCa -5'
10322 3' -56.3 NC_002687.1 + 77492 0.72 0.786302
Target:  5'- ---uGUCgACCCGACGCCcGCAACGUu -3'
miRNA:   3'- uggcUAGgUGGGUUGCGGuCGUUGCA- -5'
10322 3' -56.3 NC_002687.1 + 144711 0.72 0.777512
Target:  5'- aACCGAcUCUugACCCAGuCGUUAGCGACGg -3'
miRNA:   3'- -UGGCU-AGG--UGGGUU-GCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 12963 0.72 0.768605
Target:  5'- aGCCGAU-CACagAGCGCCGGCAACa- -3'
miRNA:   3'- -UGGCUAgGUGggUUGCGGUCGUUGca -5'
10322 3' -56.3 NC_002687.1 + 100664 0.73 0.741253
Target:  5'- cACCGGUgCCGCCUucacCGUCGGCGACGc -3'
miRNA:   3'- -UGGCUA-GGUGGGuu--GCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 248750 0.73 0.722574
Target:  5'- -gCGAUCCuCCCG--GCCAGCAGCGa -3'
miRNA:   3'- ugGCUAGGuGGGUugCGGUCGUUGCa -5'
10322 3' -56.3 NC_002687.1 + 72641 0.73 0.703614
Target:  5'- cGCCGAUagaUCGCUCAAUGUCAGCGGCa- -3'
miRNA:   3'- -UGGCUA---GGUGGGUUGCGGUCGUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.