miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10323 3' -55.2 NC_002687.1 + 91257 1.09 0.007271
Target:  5'- aUGAUGACGCCUGGUACCAACACCCCAa -3'
miRNA:   3'- -ACUACUGCGGACCAUGGUUGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 20749 0.75 0.668635
Target:  5'- uUGGUGGCuGCC-GGUGCCGAUgucaacuuccguaGCCCCAa -3'
miRNA:   3'- -ACUACUG-CGGaCCAUGGUUG-------------UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 279641 0.74 0.708405
Target:  5'- cUGGUGG-GCCggUGGUGCCGGCACCaCCu -3'
miRNA:   3'- -ACUACUgCGG--ACCAUGGUUGUGG-GGu -5'
10323 3' -55.2 NC_002687.1 + 125069 0.74 0.735962
Target:  5'- cGAUG-CGCCUGGUGCCcACaaagggcgccguuGCCUCAa -3'
miRNA:   3'- aCUACuGCGGACCAUGGuUG-------------UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 283551 0.74 0.746242
Target:  5'- ----cGCGCCUGGUGCUGcCGCCCCu -3'
miRNA:   3'- acuacUGCGGACCAUGGUuGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 117657 0.73 0.782603
Target:  5'- cGAUGGCGCCUGccaUGCCuauGGCACCUCc -3'
miRNA:   3'- aCUACUGCGGACc--AUGG---UUGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 150839 0.72 0.833262
Target:  5'- cGAUGugGucuaCCUGGUACCcugcugGACAuuCCCCAa -3'
miRNA:   3'- aCUACugC----GGACCAUGG------UUGU--GGGGU- -5'
10323 3' -55.2 NC_002687.1 + 134430 0.71 0.856411
Target:  5'- gUGGUGACGCCacGGUGCCAagaGCGCgCg- -3'
miRNA:   3'- -ACUACUGCGGa-CCAUGGU---UGUGgGgu -5'
10323 3' -55.2 NC_002687.1 + 319846 0.71 0.863761
Target:  5'- -uAUGGC-CCUGGUAuCCAAaaaGCCCCAc -3'
miRNA:   3'- acUACUGcGGACCAU-GGUUg--UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 85607 0.71 0.884637
Target:  5'- aGGUG-UGCCUGGU-CCAGCcgGCCCUc -3'
miRNA:   3'- aCUACuGCGGACCAuGGUUG--UGGGGu -5'
10323 3' -55.2 NC_002687.1 + 84883 0.71 0.884637
Target:  5'- cGGUGACGUCU-GUACCGAgcgugaagcCACCCUg -3'
miRNA:   3'- aCUACUGCGGAcCAUGGUU---------GUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 97610 0.7 0.893752
Target:  5'- gGAUGACGCCguacagugaugacGUGCCGGCACCgUg -3'
miRNA:   3'- aCUACUGCGGac-----------CAUGGUUGUGGgGu -5'
10323 3' -55.2 NC_002687.1 + 315807 0.7 0.903661
Target:  5'- gGAUGcuuuuuccgccGCGCCgGGUGCCGccgccGCACCCgAa -3'
miRNA:   3'- aCUAC-----------UGCGGaCCAUGGU-----UGUGGGgU- -5'
10323 3' -55.2 NC_002687.1 + 275620 0.7 0.909575
Target:  5'- ---cGGCGCCUGcGUACaugAGCACCuCCAu -3'
miRNA:   3'- acuaCUGCGGAC-CAUGg--UUGUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 298667 0.7 0.909575
Target:  5'- ----cGCGCCUGGUGugccCCGGCGCCUCu -3'
miRNA:   3'- acuacUGCGGACCAU----GGUUGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 115748 0.69 0.920749
Target:  5'- cGAUGACaCCUGGUGCUuuccaGGCGCUgCGa -3'
miRNA:   3'- aCUACUGcGGACCAUGG-----UUGUGGgGU- -5'
10323 3' -55.2 NC_002687.1 + 309546 0.69 0.931042
Target:  5'- uUGAUGuuGCGgCUGGcgGCuCAGCACCUCGa -3'
miRNA:   3'- -ACUAC--UGCgGACCa-UG-GUUGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 98154 0.69 0.931042
Target:  5'- cGAUGGUGCCggUGGUGCCAGCGgUgCCAg -3'
miRNA:   3'- aCUACUGCGG--ACCAUGGUUGUgG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 97996 0.69 0.940456
Target:  5'- cGGUGucacCGCCgacacGGUGCCGGCACgUCAu -3'
miRNA:   3'- aCUACu---GCGGa----CCAUGGUUGUGgGGU- -5'
10323 3' -55.2 NC_002687.1 + 179899 0.69 0.944834
Target:  5'- aUGAUGACGCuCUGGagagagagUGCaGACAUCUCAa -3'
miRNA:   3'- -ACUACUGCG-GACC--------AUGgUUGUGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.