miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10323 3' -55.2 NC_002687.1 + 251786 0.67 0.969597
Target:  5'- ---gGAC-CCUGGUugCGGCAUCCaCAg -3'
miRNA:   3'- acuaCUGcGGACCAugGUUGUGGG-GU- -5'
10323 3' -55.2 NC_002687.1 + 178910 0.67 0.969597
Target:  5'- cGGUGuACGUugucaccgCUGGUACU--CACCCCAu -3'
miRNA:   3'- aCUAC-UGCG--------GACCAUGGuuGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 5921 0.67 0.969597
Target:  5'- gUGAaGACGCaUUGGcgGCCGAUauggcaGCCCCAc -3'
miRNA:   3'- -ACUaCUGCG-GACCa-UGGUUG------UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 208786 0.68 0.960211
Target:  5'- cGAcGACG-UUGGUGCCGagaACgACCCCAg -3'
miRNA:   3'- aCUaCUGCgGACCAUGGU---UG-UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 208714 0.68 0.960211
Target:  5'- cGAcGACG-UUGGUGCCGagaACgACCCCAg -3'
miRNA:   3'- aCUaCUGCgGACCAUGGU---UG-UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 208642 0.68 0.960211
Target:  5'- cGAgGACG-UUGGUGCCGagaACgACCCCAg -3'
miRNA:   3'- aCUaCUGCgGACCAUGGU---UG-UGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 100397 0.68 0.960211
Target:  5'- gGAcGGCGUCUcGGUGCCAAU-CCUCAc -3'
miRNA:   3'- aCUaCUGCGGA-CCAUGGUUGuGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 313759 0.68 0.952944
Target:  5'- aUGAUGGCGgC-GGUGCCGACAgCUUu -3'
miRNA:   3'- -ACUACUGCgGaCCAUGGUUGUgGGGu -5'
10323 3' -55.2 NC_002687.1 + 96372 0.68 0.952944
Target:  5'- -----gUGCUUGGUGCCGGCGCCgCGg -3'
miRNA:   3'- acuacuGCGGACCAUGGUUGUGGgGU- -5'
10323 3' -55.2 NC_002687.1 + 4581 0.68 0.952944
Target:  5'- cGAgcucUGACGCCcggaagGGUgggugcucugaaACCGGCAUCCCGu -3'
miRNA:   3'- aCU----ACUGCGGa-----CCA------------UGGUUGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 211784 0.68 0.948996
Target:  5'- ---cGACGCCUGGauuuUACCGAU-CUCCAa -3'
miRNA:   3'- acuaCUGCGGACC----AUGGUUGuGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 179899 0.69 0.944834
Target:  5'- aUGAUGACGCuCUGGagagagagUGCaGACAUCUCAa -3'
miRNA:   3'- -ACUACUGCG-GACC--------AUGgUUGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 97996 0.69 0.940456
Target:  5'- cGGUGucacCGCCgacacGGUGCCGGCACgUCAu -3'
miRNA:   3'- aCUACu---GCGGa----CCAUGGUUGUGgGGU- -5'
10323 3' -55.2 NC_002687.1 + 309546 0.69 0.931042
Target:  5'- uUGAUGuuGCGgCUGGcgGCuCAGCACCUCGa -3'
miRNA:   3'- -ACUAC--UGCgGACCa-UG-GUUGUGGGGU- -5'
10323 3' -55.2 NC_002687.1 + 98154 0.69 0.931042
Target:  5'- cGAUGGUGCCggUGGUGCCAGCGgUgCCAg -3'
miRNA:   3'- aCUACUGCGG--ACCAUGGUUGUgG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 115748 0.69 0.920749
Target:  5'- cGAUGACaCCUGGUGCUuuccaGGCGCUgCGa -3'
miRNA:   3'- aCUACUGcGGACCAUGG-----UUGUGGgGU- -5'
10323 3' -55.2 NC_002687.1 + 275620 0.7 0.909575
Target:  5'- ---cGGCGCCUGcGUACaugAGCACCuCCAu -3'
miRNA:   3'- acuaCUGCGGAC-CAUGg--UUGUGG-GGU- -5'
10323 3' -55.2 NC_002687.1 + 298667 0.7 0.909575
Target:  5'- ----cGCGCCUGGUGugccCCGGCGCCUCu -3'
miRNA:   3'- acuacUGCGGACCAU----GGUUGUGGGGu -5'
10323 3' -55.2 NC_002687.1 + 315807 0.7 0.903661
Target:  5'- gGAUGcuuuuuccgccGCGCCgGGUGCCGccgccGCACCCgAa -3'
miRNA:   3'- aCUAC-----------UGCGGaCCAUGGU-----UGUGGGgU- -5'
10323 3' -55.2 NC_002687.1 + 97610 0.7 0.893752
Target:  5'- gGAUGACGCCguacagugaugacGUGCCGGCACCgUg -3'
miRNA:   3'- aCUACUGCGGac-----------CAUGGUUGUGGgGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.