miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10323 5' -51.6 NC_002687.1 + 316054 0.66 0.99874
Target:  5'- uUCGGUGCgGCUggcggUGGUGCCGAUgGUGc -3'
miRNA:   3'- cGGUCAUG-CGA-----ACCGUGGCUAgUAUu -5'
10323 5' -51.6 NC_002687.1 + 199796 0.66 0.99874
Target:  5'- -aCGGUggugGCGaUUGGCACCGAgCGUAAu -3'
miRNA:   3'- cgGUCA----UGCgAACCGUGGCUaGUAUU- -5'
10323 5' -51.6 NC_002687.1 + 238723 0.66 0.998489
Target:  5'- uGCCAuUGuCGU-UGGCACgGAUCAUGg -3'
miRNA:   3'- -CGGUcAU-GCGaACCGUGgCUAGUAUu -5'
10323 5' -51.6 NC_002687.1 + 56875 0.66 0.998196
Target:  5'- cGCguGUAUGCcgcGGCGCCGGUUc--- -3'
miRNA:   3'- -CGguCAUGCGaa-CCGUGGCUAGuauu -5'
10323 5' -51.6 NC_002687.1 + 182485 0.66 0.998196
Target:  5'- cGCCAGcUGCGCUUcGGguCgCGAUCc--- -3'
miRNA:   3'- -CGGUC-AUGCGAA-CCguG-GCUAGuauu -5'
10323 5' -51.6 NC_002687.1 + 329117 0.66 0.998196
Target:  5'- cGCCGaUGCuCUUGGcCACCGAUCc--- -3'
miRNA:   3'- -CGGUcAUGcGAACC-GUGGCUAGuauu -5'
10323 5' -51.6 NC_002687.1 + 275265 0.67 0.997466
Target:  5'- uGCuCAuGUACGCa-GGCGCCGA-CGUGGa -3'
miRNA:   3'- -CG-GU-CAUGCGaaCCGUGGCUaGUAUU- -5'
10323 5' -51.6 NC_002687.1 + 88126 0.68 0.991711
Target:  5'- uGCCAccgaGCUguucGGCGCCGAUCAg-- -3'
miRNA:   3'- -CGGUcaugCGAa---CCGUGGCUAGUauu -5'
10323 5' -51.6 NC_002687.1 + 303170 0.69 0.989275
Target:  5'- cGUCGGcccGCGUUUGGCACC-AUUAUAAu -3'
miRNA:   3'- -CGGUCa--UGCGAACCGUGGcUAGUAUU- -5'
10323 5' -51.6 NC_002687.1 + 225899 0.7 0.976193
Target:  5'- aGCCGGUGCGggggUUGGUGCCGAUa---- -3'
miRNA:   3'- -CGGUCAUGCg---AACCGUGGCUAguauu -5'
10323 5' -51.6 NC_002687.1 + 226271 0.7 0.97364
Target:  5'- aGCCGGUGCGggggUUGGUGCCGAUgAc-- -3'
miRNA:   3'- -CGGUCAUGCg---AACCGUGGCUAgUauu -5'
10323 5' -51.6 NC_002687.1 + 226085 0.7 0.97364
Target:  5'- aGCCGGUGCGggggUUGGUGCCGAUgAc-- -3'
miRNA:   3'- -CGGUCAUGCg---AACCGUGGCUAgUauu -5'
10323 5' -51.6 NC_002687.1 + 225713 0.7 0.97364
Target:  5'- aGCCGGUGCGggggUUGGUGCCGAUgAc-- -3'
miRNA:   3'- -CGGUCAUGCg---AACCGUGGCUAgUauu -5'
10323 5' -51.6 NC_002687.1 + 71754 0.71 0.954067
Target:  5'- cGCC-GUAUGCggUGGCACCGcUCAc-- -3'
miRNA:   3'- -CGGuCAUGCGa-ACCGUGGCuAGUauu -5'
10323 5' -51.6 NC_002687.1 + 276030 0.73 0.926468
Target:  5'- uGCCucuaccccgGGUGCGCUcaUGGUGCCGAUCu--- -3'
miRNA:   3'- -CGG---------UCAUGCGA--ACCGUGGCUAGuauu -5'
10323 5' -51.6 NC_002687.1 + 26408 0.73 0.926468
Target:  5'- gGCgGGgcuCGCUUGGCACUGG-CAUAGa -3'
miRNA:   3'- -CGgUCau-GCGAACCGUGGCUaGUAUU- -5'
10323 5' -51.6 NC_002687.1 + 18221 0.75 0.861936
Target:  5'- gGCCGcaACGCUUGGCACUGAcauucaUCAUGc -3'
miRNA:   3'- -CGGUcaUGCGAACCGUGGCU------AGUAUu -5'
10323 5' -51.6 NC_002687.1 + 91223 1.09 0.013999
Target:  5'- cGCCAGUACGCUUGGCACCGAUCAUAAg -3'
miRNA:   3'- -CGGUCAUGCGAACCGUGGCUAGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.