miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10324 5' -46.8 NC_002687.1 + 29582 0.66 1
Target:  5'- --cUGGuggcGCUCGGAaggUCUCCGCc -3'
miRNA:   3'- aaaACUuua-UGAGCCUcgaAGAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 208642 0.66 1
Target:  5'- -cUUGAcGUcCUUGGGGUcgUUCUCgGCa -3'
miRNA:   3'- aaAACUuUAuGAGCCUCG--AAGAGgCG- -5'
10324 5' -46.8 NC_002687.1 + 208789 0.66 1
Target:  5'- -cUUGAcGUcCUUGGGGUcgUUCUCgGCa -3'
miRNA:   3'- aaAACUuUAuGAGCCUCG--AAGAGgCG- -5'
10324 5' -46.8 NC_002687.1 + 263240 0.66 1
Target:  5'- --cUGguGUACcCGGAGUca-UCCGCg -3'
miRNA:   3'- aaaACuuUAUGaGCCUCGaagAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 227013 0.66 0.999999
Target:  5'- ---aGGAcgACgaCGGAGCggCUUCGCc -3'
miRNA:   3'- aaaaCUUuaUGa-GCCUCGaaGAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 319205 0.66 0.999999
Target:  5'- ---cGGAGUACUCGGuucccuucaucucccAggccguGCUUCUCuCGCg -3'
miRNA:   3'- aaaaCUUUAUGAGCC---------------U------CGAAGAG-GCG- -5'
10324 5' -46.8 NC_002687.1 + 109951 0.66 0.999999
Target:  5'- ---cGAAGgucuCUCGGGaacaccGCUUCUCUGUc -3'
miRNA:   3'- aaaaCUUUau--GAGCCU------CGAAGAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 8873 0.66 0.999999
Target:  5'- ---cGAcGAUACUCGGuGUUUUUCgUGCa -3'
miRNA:   3'- aaaaCU-UUAUGAGCCuCGAAGAG-GCG- -5'
10324 5' -46.8 NC_002687.1 + 197278 0.66 0.999998
Target:  5'- -aUUGAAGUGCuUCGuGAGCUcaaaaUCUaugcaCGCu -3'
miRNA:   3'- aaAACUUUAUG-AGC-CUCGA-----AGAg----GCG- -5'
10324 5' -46.8 NC_002687.1 + 222869 0.66 0.999998
Target:  5'- -aUUGAAGUGCuUCGuGAGCUcaaaaUCUaugcaCGCu -3'
miRNA:   3'- aaAACUUUAUG-AGC-CUCGA-----AGAg----GCG- -5'
10324 5' -46.8 NC_002687.1 + 268991 0.66 0.999998
Target:  5'- -aUUGAAGUGCuUCGuGAGCUcaaaaUCUaugcaCGCu -3'
miRNA:   3'- aaAACUUUAUG-AGC-CUCGA-----AGAg----GCG- -5'
10324 5' -46.8 NC_002687.1 + 96493 0.67 0.999997
Target:  5'- ---cGAGcgACgCGGGccGCgUUCUCCGCg -3'
miRNA:   3'- aaaaCUUuaUGaGCCU--CG-AAGAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 153845 0.67 0.999989
Target:  5'- ---cGAGuUGCaCGGGGCUUaaaugcaaacCUCCGCg -3'
miRNA:   3'- aaaaCUUuAUGaGCCUCGAA----------GAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 301034 0.68 0.999985
Target:  5'- ---gGAGAgAUUCGGuccaggugAGCUUCUCgGCg -3'
miRNA:   3'- aaaaCUUUaUGAGCC--------UCGAAGAGgCG- -5'
10324 5' -46.8 NC_002687.1 + 267544 0.68 0.999985
Target:  5'- ---gGAAAUACUCGagaguGAcgucgguaauacGCUUCUUCGCg -3'
miRNA:   3'- aaaaCUUUAUGAGC-----CU------------CGAAGAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 76779 0.68 0.999972
Target:  5'- ---aGAAcgGUGCcaacaugCGGAGCUUCUCgaGCa -3'
miRNA:   3'- aaaaCUU--UAUGa------GCCUCGAAGAGg-CG- -5'
10324 5' -46.8 NC_002687.1 + 4614 0.69 0.999934
Target:  5'- ---aGAGuuagACUCGGcGCUUCUaggcaCCGCg -3'
miRNA:   3'- aaaaCUUua--UGAGCCuCGAAGA-----GGCG- -5'
10324 5' -46.8 NC_002687.1 + 2615 0.69 0.999888
Target:  5'- ---cGuuAUcCUCGGAGCaUgUCCGCg -3'
miRNA:   3'- aaaaCuuUAuGAGCCUCGaAgAGGCG- -5'
10324 5' -46.8 NC_002687.1 + 131048 0.7 0.999746
Target:  5'- cUUUGAAcagauacaccacaaGUACUCGGGGCggUCUuCUGUc -3'
miRNA:   3'- aAAACUU--------------UAUGAGCCUCGa-AGA-GGCG- -5'
10324 5' -46.8 NC_002687.1 + 172841 0.71 0.999417
Target:  5'- gUUUGGAGauUUCGGAGUgcCUCUGCu -3'
miRNA:   3'- aAAACUUUauGAGCCUCGaaGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.