miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10325 3' -54.1 NC_002687.1 + 62917 0.66 0.996045
Target:  5'- --uUCCACGAGcACguAUCGuCACGCACa -3'
miRNA:   3'- gcuAGGUGCUCcUG--UGGCuGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 58109 0.66 0.996045
Target:  5'- aCGA-CCAgaguCGAGGGCgGCCGA-GCGCGCc -3'
miRNA:   3'- -GCUaGGU----GCUCCUG-UGGCUgUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 99075 0.66 0.996045
Target:  5'- gCGAccaUCUACGGaGAUACCGAC-CACGa -3'
miRNA:   3'- -GCU---AGGUGCUcCUGUGGCUGuGUGUg -5'
10325 3' -54.1 NC_002687.1 + 285410 0.66 0.996045
Target:  5'- uCGGUgCugGAGGAaGCCG-CugGCAg -3'
miRNA:   3'- -GCUAgGugCUCCUgUGGCuGugUGUg -5'
10325 3' -54.1 NC_002687.1 + 234675 0.66 0.996045
Target:  5'- uGAUCaaaAUGAGGACagGCCGAUgACGCcCg -3'
miRNA:   3'- gCUAGg--UGCUCCUG--UGGCUG-UGUGuG- -5'
10325 3' -54.1 NC_002687.1 + 237077 0.66 0.995428
Target:  5'- cCGAcgUCCGCcuugauacaucuGAGGGugUCGACGCACGCu -3'
miRNA:   3'- -GCU--AGGUG------------CUCCUguGGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 309332 0.66 0.995428
Target:  5'- ---aCCAcCGAGGGCGcuguCCGGCGCAUgaGCg -3'
miRNA:   3'- gcuaGGU-GCUCCUGU----GGCUGUGUG--UG- -5'
10325 3' -54.1 NC_002687.1 + 252227 0.66 0.995428
Target:  5'- uCGGUCC-CG-GGACGCCauccgGGCGCAUg- -3'
miRNA:   3'- -GCUAGGuGCuCCUGUGG-----CUGUGUGug -5'
10325 3' -54.1 NC_002687.1 + 27691 0.66 0.994734
Target:  5'- uGuugCCAacaGAgGGGCugcCCGACACACGCc -3'
miRNA:   3'- gCua-GGUg--CU-CCUGu--GGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 96731 0.66 0.994734
Target:  5'- -cAUCCGCG---GCGCCGGCACcaaGCACg -3'
miRNA:   3'- gcUAGGUGCuccUGUGGCUGUG---UGUG- -5'
10325 3' -54.1 NC_002687.1 + 254720 0.66 0.99466
Target:  5'- cCGuggCUGCGAGGucacCGCCGACcacagcaugucaaACACGCg -3'
miRNA:   3'- -GCua-GGUGCUCCu---GUGGCUG-------------UGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 179034 0.66 0.994279
Target:  5'- uGG-CCACGAGGACgaaaaagucguaguuACCGuCGCGUACg -3'
miRNA:   3'- gCUaGGUGCUCCUG---------------UGGCuGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 330941 0.66 0.993958
Target:  5'- uGAaucgCCACGAcGGCuGCCGGCAUguGCACg -3'
miRNA:   3'- gCUa---GGUGCUcCUG-UGGCUGUG--UGUG- -5'
10325 3' -54.1 NC_002687.1 + 158223 0.66 0.993958
Target:  5'- aGAUacuCGAGGGC-CUGGuCGCACACa -3'
miRNA:   3'- gCUAgguGCUCCUGuGGCU-GUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 238677 0.66 0.993958
Target:  5'- gGAUCguuCGGuGGGcCACCGACGCuGCGCg -3'
miRNA:   3'- gCUAGgu-GCU-CCU-GUGGCUGUG-UGUG- -5'
10325 3' -54.1 NC_002687.1 + 255853 0.66 0.99345
Target:  5'- cCGAUUCACcucaagcccaacaguGAGGugGCACUGACAgACAUu -3'
miRNA:   3'- -GCUAGGUG---------------CUCC--UGUGGCUGUgUGUG- -5'
10325 3' -54.1 NC_002687.1 + 283540 0.66 0.993092
Target:  5'- gGAgUCACGAGGGgGCucgCGACACuauGCACa -3'
miRNA:   3'- gCUaGGUGCUCCUgUG---GCUGUG---UGUG- -5'
10325 3' -54.1 NC_002687.1 + 169791 0.67 0.99213
Target:  5'- aGGUCCACcguGucGugGCCGACGCcgacgucgACACg -3'
miRNA:   3'- gCUAGGUG---CucCugUGGCUGUG--------UGUG- -5'
10325 3' -54.1 NC_002687.1 + 226708 0.67 0.99213
Target:  5'- --uUCCACGAacaccgguGGACGCgGACGCguguggACGCa -3'
miRNA:   3'- gcuAGGUGCU--------CCUGUGgCUGUG------UGUG- -5'
10325 3' -54.1 NC_002687.1 + 253072 0.67 0.991064
Target:  5'- -aGUCgACGAagucGGuCACCGcCGCACACg -3'
miRNA:   3'- gcUAGgUGCU----CCuGUGGCuGUGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.