miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10325 3' -54.1 NC_002687.1 + 312912 0.67 0.991064
Target:  5'- gCGAUCCGUGAGGGCagauGCCG-CGgAUGCa -3'
miRNA:   3'- -GCUAGGUGCUCCUG----UGGCuGUgUGUG- -5'
10325 3' -54.1 NC_002687.1 + 135603 0.67 0.991064
Target:  5'- gCGGUUUggcaACGGGGACAuCUGGCAgGCAUu -3'
miRNA:   3'- -GCUAGG----UGCUCCUGU-GGCUGUgUGUG- -5'
10325 3' -54.1 NC_002687.1 + 240396 0.67 0.990723
Target:  5'- aCGcugCCauGCGAGGuCACCGaaaaaccuuugccaGCGCACGCa -3'
miRNA:   3'- -GCua-GG--UGCUCCuGUGGC--------------UGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 252341 0.67 0.989888
Target:  5'- uGAUgC-CGAGGACGCCG-CGCgACGg -3'
miRNA:   3'- gCUAgGuGCUCCUGUGGCuGUG-UGUg -5'
10325 3' -54.1 NC_002687.1 + 154441 0.67 0.989888
Target:  5'- -uGUUCugGAGG-CGaCGACGCACGCc -3'
miRNA:   3'- gcUAGGugCUCCuGUgGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 62125 0.67 0.989888
Target:  5'- aGAaugCCGCGAGGACgGCCGAUGuCugGa -3'
miRNA:   3'- gCUa--GGUGCUCCUG-UGGCUGU-GugUg -5'
10325 3' -54.1 NC_002687.1 + 213666 0.67 0.988594
Target:  5'- -cGUCCGCGAcGGAgAgcCCGACAaGCGCa -3'
miRNA:   3'- gcUAGGUGCU-CCUgU--GGCUGUgUGUG- -5'
10325 3' -54.1 NC_002687.1 + 80285 0.67 0.988594
Target:  5'- gCGAUCgaaucgUACGAugccGACACCGGCACGUACa -3'
miRNA:   3'- -GCUAG------GUGCUc---CUGUGGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 112604 0.67 0.988594
Target:  5'- uCGAUCCuCG-GGAUGCCGA-GCACGa -3'
miRNA:   3'- -GCUAGGuGCuCCUGUGGCUgUGUGUg -5'
10325 3' -54.1 NC_002687.1 + 182429 0.67 0.988594
Target:  5'- gCGA-CCGcCGAGGACAUgGGCA-ACGCu -3'
miRNA:   3'- -GCUaGGU-GCUCCUGUGgCUGUgUGUG- -5'
10325 3' -54.1 NC_002687.1 + 203168 0.67 0.987175
Target:  5'- cCGA-CUAUGGGGcCGCCGGUGCAUACg -3'
miRNA:   3'- -GCUaGGUGCUCCuGUGGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 238236 0.67 0.987175
Target:  5'- uGAUCCugGucaGCGCCGACGCcgGCAa -3'
miRNA:   3'- gCUAGGugCuccUGUGGCUGUG--UGUg -5'
10325 3' -54.1 NC_002687.1 + 40398 0.67 0.987175
Target:  5'- -uGUCgGCGGGGGCGuuGACcaaaagcuuGCGCACc -3'
miRNA:   3'- gcUAGgUGCUCCUGUggCUG---------UGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 295254 0.67 0.987175
Target:  5'- gGcgCUACGAGGguGCGCCucgcGGCGCAgGCg -3'
miRNA:   3'- gCuaGGUGCUCC--UGUGG----CUGUGUgUG- -5'
10325 3' -54.1 NC_002687.1 + 251248 0.67 0.987175
Target:  5'- uCGGcUUCACGGcGGauuGCACCGACucCACGCg -3'
miRNA:   3'- -GCU-AGGUGCU-CC---UGUGGCUGu-GUGUG- -5'
10325 3' -54.1 NC_002687.1 + 224843 0.67 0.987026
Target:  5'- aCGAUCggagagccgccgaCGCGGcGGCGCCGGCACggucgGCACg -3'
miRNA:   3'- -GCUAG-------------GUGCUcCUGUGGCUGUG-----UGUG- -5'
10325 3' -54.1 NC_002687.1 + 114983 0.68 0.983932
Target:  5'- uCGAU-CACGGGGACGUCGGCuuuCGCAa -3'
miRNA:   3'- -GCUAgGUGCUCCUGUGGCUGu--GUGUg -5'
10325 3' -54.1 NC_002687.1 + 156800 0.68 0.982095
Target:  5'- aGGUCCGaaAGGGCAUCGgaaacGCGCugGCa -3'
miRNA:   3'- gCUAGGUgcUCCUGUGGC-----UGUGugUG- -5'
10325 3' -54.1 NC_002687.1 + 86972 0.68 0.982095
Target:  5'- uCGAUCUuuguACgGAGGGCuuuguuguCCGAUACACAUu -3'
miRNA:   3'- -GCUAGG----UG-CUCCUGu-------GGCUGUGUGUG- -5'
10325 3' -54.1 NC_002687.1 + 65179 0.68 0.980919
Target:  5'- gGAUUCugGuaccgcugugucauGGACACCGGCGacgGCACg -3'
miRNA:   3'- gCUAGGugCu-------------CCUGUGGCUGUg--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.