miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10326 3' -56 NC_002687.1 + 151096 0.66 0.982095
Target:  5'- aACGguGGGA--GGAAGCCUCCgGg- -3'
miRNA:   3'- aUGCguUCCUggCCUUUGGAGGgCag -5'
10326 3' -56 NC_002687.1 + 95606 0.66 0.982095
Target:  5'- gACGCGAGGGaccuguuuggaCGGAugguACCUCaggauCCGUCc -3'
miRNA:   3'- aUGCGUUCCUg----------GCCUu---UGGAG-----GGCAG- -5'
10326 3' -56 NC_002687.1 + 85508 0.66 0.980104
Target:  5'- cUGCGCuacGGACCaGGggUCUCuUCGUCg -3'
miRNA:   3'- -AUGCGuu-CCUGGcCUuuGGAG-GGCAG- -5'
10326 3' -56 NC_002687.1 + 70607 0.66 0.980104
Target:  5'- cUGCuCAAGGACCu--GACCUCCCa-- -3'
miRNA:   3'- -AUGcGUUCCUGGccuUUGGAGGGcag -5'
10326 3' -56 NC_002687.1 + 306451 0.66 0.977952
Target:  5'- -uCGCGAGGuACCGGAAGUauaUCUCGUa -3'
miRNA:   3'- auGCGUUCC-UGGCCUUUGg--AGGGCAg -5'
10326 3' -56 NC_002687.1 + 220756 0.66 0.975634
Target:  5'- gGCGCAAGGGCCagccguauGGAguAGCCaUCgaUCGUCu -3'
miRNA:   3'- aUGCGUUCCUGG--------CCU--UUGG-AG--GGCAG- -5'
10326 3' -56 NC_002687.1 + 19329 0.66 0.975634
Target:  5'- gGCGCAAGGGCCagccguauGGAguAGCCaUCgaUCGUCu -3'
miRNA:   3'- aUGCGUUCCUGG--------CCU--UUGG-AG--GGCAG- -5'
10326 3' -56 NC_002687.1 + 195164 0.66 0.975634
Target:  5'- gGCGCAAGGGCCagccguauGGAguAGCCaUCgaUCGUCu -3'
miRNA:   3'- aUGCGUUCCUGG--------CCU--UUGG-AG--GGCAG- -5'
10326 3' -56 NC_002687.1 + 71481 0.66 0.973142
Target:  5'- gGCGCuuAGGcacuCCGuacGAAACCUCuuGUCu -3'
miRNA:   3'- aUGCGu-UCCu---GGC---CUUUGGAGggCAG- -5'
10326 3' -56 NC_002687.1 + 37520 0.66 0.973142
Target:  5'- gGCGguGGGAacauuugcguaCCGGcAACCUCCCc-- -3'
miRNA:   3'- aUGCguUCCU-----------GGCCuUUGGAGGGcag -5'
10326 3' -56 NC_002687.1 + 195557 0.66 0.970471
Target:  5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3'
miRNA:   3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5'
10326 3' -56 NC_002687.1 + 226441 0.66 0.970471
Target:  5'- cUACGCAGGcaGCUGGAG--CUCCCGUg -3'
miRNA:   3'- -AUGCGUUCc-UGGCCUUugGAGGGCAg -5'
10326 3' -56 NC_002687.1 + 19722 0.66 0.970471
Target:  5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3'
miRNA:   3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5'
10326 3' -56 NC_002687.1 + 221148 0.66 0.970471
Target:  5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3'
miRNA:   3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5'
10326 3' -56 NC_002687.1 + 255137 0.67 0.964568
Target:  5'- gACGCcacAGGcCCGGAAACuCUCuCCGa- -3'
miRNA:   3'- aUGCGu--UCCuGGCCUUUG-GAG-GGCag -5'
10326 3' -56 NC_002687.1 + 282656 0.67 0.961326
Target:  5'- aGCuGUAuacGGACCGGAGugCUCuuuuuuucuuaCCGUCg -3'
miRNA:   3'- aUG-CGUu--CCUGGCCUUugGAG-----------GGCAG- -5'
10326 3' -56 NC_002687.1 + 261219 0.67 0.957884
Target:  5'- -uCGCAGGaGCCGGGcuuGACCcuuuUCCCGUa -3'
miRNA:   3'- auGCGUUCcUGGCCU---UUGG----AGGGCAg -5'
10326 3' -56 NC_002687.1 + 297322 0.67 0.957884
Target:  5'- cGCGCGagcAGGGCUGacAACCUCCUGg- -3'
miRNA:   3'- aUGCGU---UCCUGGCcuUUGGAGGGCag -5'
10326 3' -56 NC_002687.1 + 34842 0.68 0.94632
Target:  5'- -uCGCGAGuGACCGGugggauCUUCCCGa- -3'
miRNA:   3'- auGCGUUC-CUGGCCuuu---GGAGGGCag -5'
10326 3' -56 NC_002687.1 + 322207 0.68 0.94632
Target:  5'- cACGCAuGGucccgaucgACCGGGAGUCUCCCG-Cg -3'
miRNA:   3'- aUGCGUuCC---------UGGCCUUUGGAGGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.