Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10326 | 3' | -56 | NC_002687.1 | + | 28898 | 0.68 | 0.937551 |
Target: 5'- gUACGC-GGGACCGGAGAaaa-CCGUg -3' miRNA: 3'- -AUGCGuUCCUGGCCUUUggagGGCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 298075 | 0.73 | 0.741736 |
Target: 5'- cGCGCGugcuuGGACCGGGGugUUCgCCGUg -3' miRNA: 3'- aUGCGUu----CCUGGCCUUugGAG-GGCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 297462 | 0.73 | 0.731469 |
Target: 5'- aGCGCAagcguucGGGGuCCGGAGACCUCCa-UCu -3' miRNA: 3'- aUGCGU-------UCCU-GGCCUUUGGAGGgcAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 221148 | 0.66 | 0.970471 |
Target: 5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3' miRNA: 3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 19722 | 0.66 | 0.970471 |
Target: 5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3' miRNA: 3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 226441 | 0.66 | 0.970471 |
Target: 5'- cUACGCAGGcaGCUGGAG--CUCCCGUg -3' miRNA: 3'- -AUGCGUUCc-UGGCCUUugGAGGGCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 306451 | 0.66 | 0.977952 |
Target: 5'- -uCGCGAGGuACCGGAAGUauaUCUCGUa -3' miRNA: 3'- auGCGUUCC-UGGCCUUUGg--AGGGCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 71481 | 0.66 | 0.973142 |
Target: 5'- gGCGCuuAGGcacuCCGuacGAAACCUCuuGUCu -3' miRNA: 3'- aUGCGu-UCCu---GGC---CUUUGGAGggCAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 195557 | 0.66 | 0.970471 |
Target: 5'- aGCGaacaaguGGGAUCGGGAcacgGCCUCCuCGUa -3' miRNA: 3'- aUGCgu-----UCCUGGCCUU----UGGAGG-GCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 282656 | 0.67 | 0.961326 |
Target: 5'- aGCuGUAuacGGACCGGAGugCUCuuuuuuucuuaCCGUCg -3' miRNA: 3'- aUG-CGUu--CCUGGCCUUugGAG-----------GGCAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 34842 | 0.68 | 0.94632 |
Target: 5'- -uCGCGAGuGACCGGugggauCUUCCCGa- -3' miRNA: 3'- auGCGUUC-CUGGCCuuu---GGAGGGCag -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 70607 | 0.66 | 0.980104 |
Target: 5'- cUGCuCAAGGACCu--GACCUCCCa-- -3' miRNA: 3'- -AUGcGUUCCUGGccuUUGGAGGGcag -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 297322 | 0.67 | 0.957884 |
Target: 5'- cGCGCGagcAGGGCUGacAACCUCCUGg- -3' miRNA: 3'- aUGCGU---UCCUGGCcuUUGGAGGGCag -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 37520 | 0.66 | 0.973142 |
Target: 5'- gGCGguGGGAacauuugcguaCCGGcAACCUCCCc-- -3' miRNA: 3'- aUGCguUCCU-----------GGCCuUUGGAGGGcag -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 308843 | 0.69 | 0.917408 |
Target: 5'- gAUGCc---ACCGGAGGCCUCCCGc- -3' miRNA: 3'- aUGCGuuccUGGCCUUUGGAGGGCag -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 146036 | 0.71 | 0.849971 |
Target: 5'- gGCGCAgcaguccgccaGGGGCCGGAAGCUgaccuugaucuugaUCUCGUg -3' miRNA: 3'- aUGCGU-----------UCCUGGCCUUUGG--------------AGGGCAg -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 129429 | 0.71 | 0.852231 |
Target: 5'- cACGCAGGGcaaGGAGACCacgaCCGUCg -3' miRNA: 3'- aUGCGUUCCuggCCUUUGGag--GGCAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 96940 | 0.7 | 0.859644 |
Target: 5'- gGCGCAGcGGugCGGGGACCgugcuuccuaCCgGUCa -3' miRNA: 3'- aUGCGUU-CCugGCCUUUGGa---------GGgCAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 118416 | 0.7 | 0.88074 |
Target: 5'- -cCGCAAGGGCgGGA--CCUgggUCCGUCa -3' miRNA: 3'- auGCGUUCCUGgCCUuuGGA---GGGCAG- -5' |
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10326 | 3' | -56 | NC_002687.1 | + | 255137 | 0.67 | 0.964568 |
Target: 5'- gACGCcacAGGcCCGGAAACuCUCuCCGa- -3' miRNA: 3'- aUGCGu--UCCuGGCCUUUG-GAG-GGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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