Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10326 | 5' | -49.8 | NC_002687.1 | + | 205886 | 0.66 | 0.999933 |
Target: 5'- cCGACu-ACuGGAGUGCGAGUuaCUUGCa -3' miRNA: 3'- uGCUGcuUGuUCUCGUGUUCG--GAACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 292672 | 0.66 | 0.999933 |
Target: 5'- gUGGCGGugGuuuuGGGCACGaaagcGGCCgcgGCg -3' miRNA: 3'- uGCUGCUugUu---CUCGUGU-----UCGGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 17711 | 0.66 | 0.999933 |
Target: 5'- gGCGGCGuuuuGCGcAGAGCACAaacagAGCg--GCa -3' miRNA: 3'- -UGCUGCu---UGU-UCUCGUGU-----UCGgaaCG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 235765 | 0.66 | 0.999933 |
Target: 5'- cCGugGAACAAGAaaaGCAAGaCUUGa -3' miRNA: 3'- uGCugCUUGUUCUcg-UGUUCgGAACg -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 21476 | 0.66 | 0.999933 |
Target: 5'- -aGACGAAgAAGAGCugGGauaUUUGCu -3' miRNA: 3'- ugCUGCUUgUUCUCGugUUcg-GAACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 170369 | 0.66 | 0.999933 |
Target: 5'- --cACGAACcGGGGCACGAaCCgggGCa -3' miRNA: 3'- ugcUGCUUGuUCUCGUGUUcGGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 95056 | 0.66 | 0.999927 |
Target: 5'- gGCGugGAAgugggguuuaugguUggGGGCAuCAAGCCc-GCa -3' miRNA: 3'- -UGCugCUU--------------GuuCUCGU-GUUCGGaaCG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 311671 | 0.66 | 0.999913 |
Target: 5'- cCGGCGuucACGcAGAGCGCGGGCgaguUUUGUg -3' miRNA: 3'- uGCUGCu--UGU-UCUCGUGUUCG----GAACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 215161 | 0.66 | 0.999913 |
Target: 5'- aACGACuGGgucaGCGAGGGCAU-GGCCgugUGUg -3' miRNA: 3'- -UGCUG-CU----UGUUCUCGUGuUCGGa--ACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 196321 | 0.66 | 0.999913 |
Target: 5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3' miRNA: 3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 18887 | 0.66 | 0.999913 |
Target: 5'- aGCGACGcaaAGCucuguccuuGGGGGCGCGguGGCCUccuucUGCu -3' miRNA: 3'- -UGCUGC---UUG---------UUCUCGUGU--UCGGA-----ACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 302119 | 0.66 | 0.999913 |
Target: 5'- cCGACGAugcugggucACAGGGGUcgaGCAuuuuGCCUUcGCu -3' miRNA: 3'- uGCUGCU---------UGUUCUCG---UGUu---CGGAA-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 20486 | 0.66 | 0.999913 |
Target: 5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3' miRNA: 3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 221912 | 0.66 | 0.999913 |
Target: 5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3' miRNA: 3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 260220 | 0.66 | 0.999887 |
Target: 5'- gGCuGCGAACGc-GGC-CAAGCCaUGCa -3' miRNA: 3'- -UGcUGCUUGUucUCGuGUUCGGaACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 298440 | 0.66 | 0.999887 |
Target: 5'- cACGGCGAACAccccGGuccaAGCACGcgcgcggcggcGGCCgcgGCc -3' miRNA: 3'- -UGCUGCUUGU----UC----UCGUGU-----------UCGGaa-CG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 132757 | 0.66 | 0.999887 |
Target: 5'- gGCGACGAACAcGAGCuucuGCg--GCg -3' miRNA: 3'- -UGCUGCUUGUuCUCGuguuCGgaaCG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 77447 | 0.66 | 0.999887 |
Target: 5'- aGCGACGuccgucGACGGGAGCGuCGuGCCa-GCa -3' miRNA: 3'- -UGCUGC------UUGUUCUCGU-GUuCGGaaCG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 313361 | 0.66 | 0.999884 |
Target: 5'- cGCGGuCGAGgAAGAGCucguCAucguuaaGGCCggUGCg -3' miRNA: 3'- -UGCU-GCUUgUUCUCGu---GU-------UCGGa-ACG- -5' |
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10326 | 5' | -49.8 | NC_002687.1 | + | 64953 | 0.66 | 0.999855 |
Target: 5'- gUGGCaGAACAGGGGU-CGAGCCcagagcUUGCc -3' miRNA: 3'- uGCUG-CUUGUUCUCGuGUUCGG------AACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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