miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10326 5' -49.8 NC_002687.1 + 205886 0.66 0.999933
Target:  5'- cCGACu-ACuGGAGUGCGAGUuaCUUGCa -3'
miRNA:   3'- uGCUGcuUGuUCUCGUGUUCG--GAACG- -5'
10326 5' -49.8 NC_002687.1 + 64953 0.66 0.999855
Target:  5'- gUGGCaGAACAGGGGU-CGAGCCcagagcUUGCc -3'
miRNA:   3'- uGCUG-CUUGUUCUCGuGUUCGG------AACG- -5'
10326 5' -49.8 NC_002687.1 + 10493 0.66 0.999816
Target:  5'- gACGG-GAACGGGAGC-CGGGuCCggugGCa -3'
miRNA:   3'- -UGCUgCUUGUUCUCGuGUUC-GGaa--CG- -5'
10326 5' -49.8 NC_002687.1 + 57229 0.66 0.999816
Target:  5'- gGCGccGCGGGCAuacacGCGCAGGCgaUGCu -3'
miRNA:   3'- -UGC--UGCUUGUucu--CGUGUUCGgaACG- -5'
10326 5' -49.8 NC_002687.1 + 68865 0.66 0.999816
Target:  5'- aACGAUGAACAAGuGCu----UCUUGCa -3'
miRNA:   3'- -UGCUGCUUGUUCuCGuguucGGAACG- -5'
10326 5' -49.8 NC_002687.1 + 20024 0.66 0.999816
Target:  5'- -gGACGAGuuCGuGaAGCACGAGCUggGCg -3'
miRNA:   3'- ugCUGCUU--GUuC-UCGUGUUCGGaaCG- -5'
10326 5' -49.8 NC_002687.1 + 221450 0.66 0.999816
Target:  5'- -gGACGAGuuCGuGaAGCACGAGCUggGCg -3'
miRNA:   3'- ugCUGCUU--GUuC-UCGUGUUCGGaaCG- -5'
10326 5' -49.8 NC_002687.1 + 13872 0.66 0.999816
Target:  5'- -aGGgGAACGAGAGCGCucauGGUCgaucGCc -3'
miRNA:   3'- ugCUgCUUGUUCUCGUGu---UCGGaa--CG- -5'
10326 5' -49.8 NC_002687.1 + 14730 0.66 0.999816
Target:  5'- -aGGgGAACGAGAGCGCucauGGUCgaucGCc -3'
miRNA:   3'- ugCUgCUUGUUCUCGUGu---UCGGaa--CG- -5'
10326 5' -49.8 NC_002687.1 + 129261 0.66 0.999855
Target:  5'- cACGGCGAugAucacGGGUAUAAcGCCUccGCa -3'
miRNA:   3'- -UGCUGCUugUu---CUCGUGUU-CGGAa-CG- -5'
10326 5' -49.8 NC_002687.1 + 313361 0.66 0.999884
Target:  5'- cGCGGuCGAGgAAGAGCucguCAucguuaaGGCCggUGCg -3'
miRNA:   3'- -UGCU-GCUUgUUCUCGu---GU-------UCGGa-ACG- -5'
10326 5' -49.8 NC_002687.1 + 298440 0.66 0.999887
Target:  5'- cACGGCGAACAccccGGuccaAGCACGcgcgcggcggcGGCCgcgGCc -3'
miRNA:   3'- -UGCUGCUUGU----UC----UCGUGU-----------UCGGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 292672 0.66 0.999933
Target:  5'- gUGGCGGugGuuuuGGGCACGaaagcGGCCgcgGCg -3'
miRNA:   3'- uGCUGCUugUu---CUCGUGU-----UCGGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 18887 0.66 0.999913
Target:  5'- aGCGACGcaaAGCucuguccuuGGGGGCGCGguGGCCUccuucUGCu -3'
miRNA:   3'- -UGCUGC---UUG---------UUCUCGUGU--UCGGA-----ACG- -5'
10326 5' -49.8 NC_002687.1 + 302119 0.66 0.999913
Target:  5'- cCGACGAugcugggucACAGGGGUcgaGCAuuuuGCCUUcGCu -3'
miRNA:   3'- uGCUGCU---------UGUUCUCG---UGUu---CGGAA-CG- -5'
10326 5' -49.8 NC_002687.1 + 20486 0.66 0.999913
Target:  5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3'
miRNA:   3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 196321 0.66 0.999913
Target:  5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3'
miRNA:   3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 221912 0.66 0.999913
Target:  5'- uUGACcaacAACGAGAGCACGAGgCacaGCg -3'
miRNA:   3'- uGCUGc---UUGUUCUCGUGUUCgGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 132757 0.66 0.999887
Target:  5'- gGCGACGAACAcGAGCuucuGCg--GCg -3'
miRNA:   3'- -UGCUGCUUGUuCUCGuguuCGgaaCG- -5'
10326 5' -49.8 NC_002687.1 + 77447 0.66 0.999887
Target:  5'- aGCGACGuccgucGACGGGAGCGuCGuGCCa-GCa -3'
miRNA:   3'- -UGCUGC------UUGUUCUCGU-GUuCGGaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.