miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10326 5' -49.8 NC_002687.1 + 96992 1.14 0.012582
Target:  5'- gACGACGAACAAGAGCACAAGCCUUGCa -3'
miRNA:   3'- -UGCUGCUUGUUCUCGUGUUCGGAACG- -5'
10326 5' -49.8 NC_002687.1 + 17822 0.77 0.876141
Target:  5'- gGCGGCGuuuuGCAcAGAGCACAAGCaaaGCg -3'
miRNA:   3'- -UGCUGCu---UGU-UCUCGUGUUCGgaaCG- -5'
10326 5' -49.8 NC_002687.1 + 17489 0.76 0.896679
Target:  5'- gGCGGCGuuuuGCGcAGAGCACAAGCagaGCg -3'
miRNA:   3'- -UGCUGCu---UGU-UCUCGUGUUCGgaaCG- -5'
10326 5' -49.8 NC_002687.1 + 180970 0.76 0.903072
Target:  5'- cGCGACcGACGAGAaaaaGCACGAGCCguccgacgGCa -3'
miRNA:   3'- -UGCUGcUUGUUCU----CGUGUUCGGaa------CG- -5'
10326 5' -49.8 NC_002687.1 + 331696 0.75 0.920847
Target:  5'- cACGACccACGAuccGGCACAGGUCUUGCa -3'
miRNA:   3'- -UGCUGcuUGUUc--UCGUGUUCGGAACG- -5'
10326 5' -49.8 NC_002687.1 + 139259 0.75 0.931513
Target:  5'- gUGAUGGACGGGA-CACAGuGCCUUGUg -3'
miRNA:   3'- uGCUGCUUGUUCUcGUGUU-CGGAACG- -5'
10326 5' -49.8 NC_002687.1 + 81956 0.75 0.935021
Target:  5'- uCGACGAGCGuAGAGCcaucauggucuuccACAAGCCggccgGCa -3'
miRNA:   3'- uGCUGCUUGU-UCUCG--------------UGUUCGGaa---CG- -5'
10326 5' -49.8 NC_002687.1 + 225877 0.75 0.93649
Target:  5'- -aGACGGcuacGCAGGcAGCugGAGCCggUGCg -3'
miRNA:   3'- ugCUGCU----UGUUC-UCGugUUCGGa-ACG- -5'
10326 5' -49.8 NC_002687.1 + 226063 0.75 0.93649
Target:  5'- -aGACGGcuacGCAGGcAGCugGAGCCggUGCg -3'
miRNA:   3'- ugCUGCU----UGUUC-UCGugUUCGGa-ACG- -5'
10326 5' -49.8 NC_002687.1 + 226249 0.75 0.93649
Target:  5'- -aGACGGcuacGCAGGcAGCugGAGCCggUGCg -3'
miRNA:   3'- ugCUGCU----UGUUC-UCGugUUCGGa-ACG- -5'
10326 5' -49.8 NC_002687.1 + 6359 0.74 0.954047
Target:  5'- aGCGGCGcucagaccgcuGCGAGA-CAUGAGCCUUGCu -3'
miRNA:   3'- -UGCUGCu----------UGUUCUcGUGUUCGGAACG- -5'
10326 5' -49.8 NC_002687.1 + 41225 0.73 0.963838
Target:  5'- gAUGugGGACGGGAagggugcccgagaaGCGCGGGCaCUUGUa -3'
miRNA:   3'- -UGCugCUUGUUCU--------------CGUGUUCG-GAACG- -5'
10326 5' -49.8 NC_002687.1 + 315897 0.73 0.96799
Target:  5'- cGCGAgGGACGAGGGCugGuGCgacaUUGCa -3'
miRNA:   3'- -UGCUgCUUGUUCUCGugUuCGg---AACG- -5'
10326 5' -49.8 NC_002687.1 + 225683 0.73 0.96799
Target:  5'- -gGACGAACAgacggcuacucaGGcAGCugGAGCCggUGCg -3'
miRNA:   3'- ugCUGCUUGU------------UC-UCGugUUCGGa-ACG- -5'
10326 5' -49.8 NC_002687.1 + 107141 0.72 0.976257
Target:  5'- aACGGgGAuCAAGAccuccgucGCGCAAGCCUgcucUGCg -3'
miRNA:   3'- -UGCUgCUuGUUCU--------CGUGUUCGGA----ACG- -5'
10326 5' -49.8 NC_002687.1 + 224995 0.72 0.978629
Target:  5'- aGCGGCGGu--GGAGCugGAGCUggaGCg -3'
miRNA:   3'- -UGCUGCUuguUCUCGugUUCGGaa-CG- -5'
10326 5' -49.8 NC_002687.1 + 78443 0.72 0.98082
Target:  5'- -aGGCGAACGGGuuCACGGGUCUaGCa -3'
miRNA:   3'- ugCUGCUUGUUCucGUGUUCGGAaCG- -5'
10326 5' -49.8 NC_002687.1 + 99719 0.72 0.98082
Target:  5'- -aGGCGAACAGcuGCACGAGCgucucgguuuCUUGCa -3'
miRNA:   3'- ugCUGCUUGUUcuCGUGUUCG----------GAACG- -5'
10326 5' -49.8 NC_002687.1 + 282158 0.72 0.98284
Target:  5'- uGCGGCGGcagcgGCGGGAGUA-GGGCCUgcgGCg -3'
miRNA:   3'- -UGCUGCU-----UGUUCUCGUgUUCGGAa--CG- -5'
10326 5' -49.8 NC_002687.1 + 128692 0.71 0.986393
Target:  5'- uUGAUGuAGCAGGAGCA-GAGCCU-GCu -3'
miRNA:   3'- uGCUGC-UUGUUCUCGUgUUCGGAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.