miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 277103 0.66 1
Target:  5'- gAACGACGACGGguGUGAUuaGACuGCAa -3'
miRNA:   3'- gUUGUUGUUGUUguCGUUG--UUGuUGU- -5'
10327 3' -42.2 NC_002687.1 + 210727 0.66 1
Target:  5'- aGGCAucauCAAgaAGCAGCAagaagACGACAACGa -3'
miRNA:   3'- gUUGUu---GUUg-UUGUCGU-----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 117081 0.66 1
Target:  5'- aCGACAACAACAACcacgugucgguGCAcAUAAUGGCGa -3'
miRNA:   3'- -GUUGUUGUUGUUGu----------CGU-UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 164356 0.66 1
Target:  5'- cCGACGACGACcucGACAcCGACGaagaugGCGACAc -3'
miRNA:   3'- -GUUGUUGUUG---UUGUcGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 270327 0.66 1
Target:  5'- -uACuGCAACAACGGUGACAuGCGuGCAu -3'
miRNA:   3'- guUGuUGUUGUUGUCGUUGU-UGU-UGU- -5'
10327 3' -42.2 NC_002687.1 + 310187 0.66 1
Target:  5'- -uACAGCGGCuACAGUAGCuAACAc-- -3'
miRNA:   3'- guUGUUGUUGuUGUCGUUG-UUGUugu -5'
10327 3' -42.2 NC_002687.1 + 165592 0.66 1
Target:  5'- gUAAUAACAGCuACuGCGACAGuCGugAa -3'
miRNA:   3'- -GUUGUUGUUGuUGuCGUUGUU-GUugU- -5'
10327 3' -42.2 NC_002687.1 + 207098 0.66 1
Target:  5'- ----uGCGGguACAGCAccuccACAGCAACAa -3'
miRNA:   3'- guuguUGUUguUGUCGU-----UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 150074 0.66 1
Target:  5'- gAGCAACAcuuCGAUAGUGgaaauuguugcacACAACAACGa -3'
miRNA:   3'- gUUGUUGUu--GUUGUCGU-------------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 283350 0.66 1
Target:  5'- aCAGCugcuACAGCcACGGCgGGCGGCAAa- -3'
miRNA:   3'- -GUUGu---UGUUGuUGUCG-UUGUUGUUgu -5'
10327 3' -42.2 NC_002687.1 + 223608 0.66 1
Target:  5'- -uGCGAcCAACAAUGGauGCAACGACGg -3'
miRNA:   3'- guUGUU-GUUGUUGUCguUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 198016 0.66 1
Target:  5'- -uGCGAcCAACAAUGGauGCAACGACGg -3'
miRNA:   3'- guUGUU-GUUGUUGUCguUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 6249 0.66 1
Target:  5'- aCAACAugAACGACAaauGguAUuuCAGCAu -3'
miRNA:   3'- -GUUGUugUUGUUGU---CguUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 17315 0.66 1
Target:  5'- aGGCAAUcaggugugauaGACGAUAGUuACGACAAUAc -3'
miRNA:   3'- gUUGUUG-----------UUGUUGUCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18907 0.66 1
Target:  5'- aAGCAugAugAGcCAGCccCAGCGACGc -3'
miRNA:   3'- gUUGUugUugUU-GUCGuuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 330116 0.66 1
Target:  5'- -cGCAGCAGCGAUcguguucGCAcucguauACGACGGCAg -3'
miRNA:   3'- guUGUUGUUGUUGu------CGU-------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 130394 0.66 1
Target:  5'- gGAUcuCGAC-GCAGCAuacaaaACAACAACGa -3'
miRNA:   3'- gUUGuuGUUGuUGUCGU------UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 151719 0.66 1
Target:  5'- --uCGAUggUAAUAGUAcCAACGACAu -3'
miRNA:   3'- guuGUUGuuGUUGUCGUuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 70496 0.66 1
Target:  5'- -uACAGCGuguACGGCGACGACcuccGCAa -3'
miRNA:   3'- guUGUUGUuguUGUCGUUGUUGu---UGU- -5'
10327 3' -42.2 NC_002687.1 + 114101 0.66 1
Target:  5'- -uGCAGCAaaGCGucGCuGCGGCAGCggUAa -3'
miRNA:   3'- guUGUUGU--UGU--UGuCGUUGUUGuuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.