miRNA display CGI


Results 61 - 80 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 251755 0.67 1
Target:  5'- uCGACAACGugcuggcuuucaACGACAGCucgagAAUGACGACc -3'
miRNA:   3'- -GUUGUUGU------------UGUUGUCG-----UUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 215897 0.67 1
Target:  5'- aAACAAUugUAACAGCGGCcAgGACGc -3'
miRNA:   3'- gUUGUUGuuGUUGUCGUUGuUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 224633 0.67 1
Target:  5'- uCAGCAuCGGCAuCGGCAuCGGCAucgGCAg -3'
miRNA:   3'- -GUUGUuGUUGUuGUCGUuGUUGU---UGU- -5'
10327 3' -42.2 NC_002687.1 + 182422 0.67 1
Target:  5'- --cCGAgGACAugGGCAACGcucggGCAACc -3'
miRNA:   3'- guuGUUgUUGUugUCGUUGU-----UGUUGu -5'
10327 3' -42.2 NC_002687.1 + 312450 0.67 1
Target:  5'- gAACAGCAccACAcaguGCaAGCGGCGcucACAGCAc -3'
miRNA:   3'- gUUGUUGU--UGU----UG-UCGUUGU---UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 41347 0.67 1
Target:  5'- gCAGgAACAGCugacuCAGCAGCu-CGACGc -3'
miRNA:   3'- -GUUgUUGUUGuu---GUCGUUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 238227 0.67 1
Target:  5'- uCAGCGcCGACGcCGGCAACGugAAa- -3'
miRNA:   3'- -GUUGUuGUUGUuGUCGUUGUugUUgu -5'
10327 3' -42.2 NC_002687.1 + 12827 0.67 1
Target:  5'- aGGCAGaagguGCAaaACAGCAGCA-CAGCGu -3'
miRNA:   3'- gUUGUUgu---UGU--UGUCGUUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 261600 0.67 1
Target:  5'- cCGGCAAgAugAGCuGCAugGGuCAGCAa -3'
miRNA:   3'- -GUUGUUgUugUUGuCGUugUU-GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 288150 0.67 1
Target:  5'- uGugAACAGCGugGGCGAC--CAAUAc -3'
miRNA:   3'- gUugUUGUUGUugUCGUUGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 71456 0.67 1
Target:  5'- aGACGACGAguGCcgcuAGC-ACGACGGCGc -3'
miRNA:   3'- gUUGUUGUUguUG----UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 254362 0.67 1
Target:  5'- uCGGCggUGACcucGCAGCcACGGCAACc -3'
miRNA:   3'- -GUUGuuGUUGu--UGUCGuUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 38071 0.67 1
Target:  5'- aAGCAGCGACuuguggAGCAGCu-CAACcACAu -3'
miRNA:   3'- gUUGUUGUUG------UUGUCGuuGUUGuUGU- -5'
10327 3' -42.2 NC_002687.1 + 292136 0.67 1
Target:  5'- gUAGCcACGugcuuguAUAGCAGCuGCAGCAGCu -3'
miRNA:   3'- -GUUGuUGU-------UGUUGUCGuUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 171291 0.67 1
Target:  5'- gUAugAGCAACuuCGGCAACAuguuuGCAc -3'
miRNA:   3'- -GUugUUGUUGuuGUCGUUGUugu--UGU- -5'
10327 3' -42.2 NC_002687.1 + 17430 0.67 1
Target:  5'- aAGCGuuGCAGCcGCAGCGGCuGCuuCAa -3'
miRNA:   3'- gUUGU--UGUUGuUGUCGUUGuUGuuGU- -5'
10327 3' -42.2 NC_002687.1 + 161771 0.67 1
Target:  5'- -cGCAcguGCuuCGACAGUuccGACGACGGCAu -3'
miRNA:   3'- guUGU---UGuuGUUGUCG---UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 126819 0.67 1
Target:  5'- -uACAGCAGCAACcugGGCGcuccucgacccgGCGGCAugAg -3'
miRNA:   3'- guUGUUGUUGUUG---UCGU------------UGUUGUugU- -5'
10327 3' -42.2 NC_002687.1 + 17790 0.67 1
Target:  5'- aAGCAGCcGCuGCGGCuGCAACGcuugGCAu -3'
miRNA:   3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 46402 0.67 1
Target:  5'- uGACAagACAACGGCGGguGCAAaaagcugGACAg -3'
miRNA:   3'- gUUGU--UGUUGUUGUCguUGUUg------UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.