miRNA display CGI


Results 81 - 100 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 159185 0.67 1
Target:  5'- gGGCuuuCGAC--CGGCGGCGACGGCGg -3'
miRNA:   3'- gUUGuu-GUUGuuGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 307647 0.67 1
Target:  5'- uCGGCGGCggUGGCGGUgguggugcuggcacgGGCGGCGGCGg -3'
miRNA:   3'- -GUUGUUGuuGUUGUCG---------------UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 118238 0.67 1
Target:  5'- gAACGAgGACGACGGUgcagcgccugcgucgAACGAgGACGa -3'
miRNA:   3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 93695 0.67 1
Target:  5'- cCAAUAuACGACAAgAGUAACA-CAACc -3'
miRNA:   3'- -GUUGU-UGUUGUUgUCGUUGUuGUUGu -5'
10327 3' -42.2 NC_002687.1 + 316196 0.67 1
Target:  5'- -uGCGGCGggaucuucggguGCGGCGGCGGCAcccggcGCGGCGg -3'
miRNA:   3'- guUGUUGU------------UGUUGUCGUUGU------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 249087 0.67 1
Target:  5'- gAACAACGGCAACgAGCucAUGAgAGCGc -3'
miRNA:   3'- gUUGUUGUUGUUG-UCGu-UGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 179873 0.67 1
Target:  5'- -uACGACugUuuCAGCAgGCAACGGCAa -3'
miRNA:   3'- guUGUUGuuGuuGUCGU-UGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 27550 0.67 1
Target:  5'- uCAGCGACcgUGuCGGgGGCGACGACAu -3'
miRNA:   3'- -GUUGUUGuuGUuGUCgUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 110255 0.67 1
Target:  5'- -cACGGCGACAucaAGCc-CGACAACAu -3'
miRNA:   3'- guUGUUGUUGUug-UCGuuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 161771 0.67 1
Target:  5'- -cGCAcguGCuuCGACAGUuccGACGACGGCAu -3'
miRNA:   3'- guUGU---UGuuGUUGUCG---UUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 126819 0.67 1
Target:  5'- -uACAGCAGCAACcugGGCGcuccucgacccgGCGGCAugAg -3'
miRNA:   3'- guUGUUGUUGUUG---UCGU------------UGUUGUugU- -5'
10327 3' -42.2 NC_002687.1 + 18123 0.67 1
Target:  5'- aAGCAGCcGCuGCGGCuGCAACGcuuaGCAu -3'
miRNA:   3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 12827 0.67 1
Target:  5'- aGGCAGaagguGCAaaACAGCAGCA-CAGCGu -3'
miRNA:   3'- gUUGUUgu---UGU--UGUCGUUGUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 116253 0.67 1
Target:  5'- gCAGCAaaagaACAAgAACaAGCG-CGACGACAc -3'
miRNA:   3'- -GUUGU-----UGUUgUUG-UCGUuGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 118178 0.67 1
Target:  5'- gAACGAgGACGACGGUgccgcgccugcgucgAACGAgGACGa -3'
miRNA:   3'- gUUGUUgUUGUUGUCG---------------UUGUUgUUGU- -5'
10327 3' -42.2 NC_002687.1 + 261600 0.67 1
Target:  5'- cCGGCAAgAugAGCuGCAugGGuCAGCAa -3'
miRNA:   3'- -GUUGUUgUugUUGuCGUugUU-GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 46402 0.67 1
Target:  5'- uGACAagACAACGGCGGguGCAAaaagcugGACAg -3'
miRNA:   3'- gUUGU--UGUUGUUGUCguUGUUg------UUGU- -5'
10327 3' -42.2 NC_002687.1 + 17790 0.67 1
Target:  5'- aAGCAGCcGCuGCGGCuGCAACGcuugGCAu -3'
miRNA:   3'- gUUGUUGuUGuUGUCGuUGUUGU----UGU- -5'
10327 3' -42.2 NC_002687.1 + 25238 0.68 1
Target:  5'- aAGCAGC-ACGACGGCA-CAgacuuguuuacACGACAu -3'
miRNA:   3'- gUUGUUGuUGUUGUCGUuGU-----------UGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 238758 0.68 1
Target:  5'- uCGACGACGACAuCGGUAugauggccauCAACGACc -3'
miRNA:   3'- -GUUGUUGUUGUuGUCGUu---------GUUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.