miRNA display CGI


Results 21 - 40 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10327 3' -42.2 NC_002687.1 + 10051 0.9 0.748988
Target:  5'- gCAGCAGCAGCAGCAGUAGCAGuagUAGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUU---GUUGU- -5'
10327 3' -42.2 NC_002687.1 + 20512 0.9 0.76928
Target:  5'- aCAAUcACaAACAACAGCAGCAGCAACAg -3'
miRNA:   3'- -GUUGuUG-UUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102552 0.89 0.817402
Target:  5'- nAACAGCGAauuuuGCAGCAACAACAACAg -3'
miRNA:   3'- gUUGUUGUUgu---UGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 153280 0.89 0.792892
Target:  5'- aAGCGACGgaagcagggacuuccACAGCAGCAGCAGCAGCGg -3'
miRNA:   3'- gUUGUUGU---------------UGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 18064 0.89 0.798653
Target:  5'- gGACAACGACAGCgAGCcACAGCAACAc -3'
miRNA:   3'- gUUGUUGUUGUUG-UCGuUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 82195 0.86 0.905093
Target:  5'- cCGACGACGACGACAGCGugA-CGGCAu -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUugUuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 282054 0.86 0.911575
Target:  5'- uCAGCGGCGGCAggggccguagugGCAGCAGCGGCGGCu -3'
miRNA:   3'- -GUUGUUGUUGU------------UGUCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 10315 0.86 0.891337
Target:  5'- gCAGCAgugGCGGCGGCAGUGGCGGCGGCAg -3'
miRNA:   3'- -GUUGU---UGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 91190 0.86 0.911575
Target:  5'- aGACAGCAACAuCAGCAGCGAguACAu -3'
miRNA:   3'- gUUGUUGUUGUuGUCGUUGUUguUGU- -5'
10327 3' -42.2 NC_002687.1 + 215305 0.86 0.917789
Target:  5'- uCGGCGACGGCGACAGUGACGGCcACGa -3'
miRNA:   3'- -GUUGUUGUUGUUGUCGUUGUUGuUGU- -5'
10327 3' -42.2 NC_002687.1 + 12182 0.86 0.917789
Target:  5'- gAGCAGCAGCGGCAGCGgaaGCggUAGCAg -3'
miRNA:   3'- gUUGUUGUUGUUGUCGU---UGuuGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102501 0.86 0.917789
Target:  5'- ---gAACAGCAGCAGCAACAGCGAa- -3'
miRNA:   3'- guugUUGUUGUUGUCGUUGUUGUUgu -5'
10327 3' -42.2 NC_002687.1 + 12030 0.85 0.923734
Target:  5'- gCAGCAGCAGCAAguGCAGaaaaaGACAGCAg -3'
miRNA:   3'- -GUUGUUGUUGUUguCGUUg----UUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 223522 0.85 0.936897
Target:  5'- gCGACAGCAcuggugguggugaugGCAGCgaAGCAACAGCAGCAg -3'
miRNA:   3'- -GUUGUUGU---------------UGUUG--UCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 102440 0.84 0.94941
Target:  5'- cCAGCAGCAgauGCAGCAgagacaggcGCAGCAGCGGCAg -3'
miRNA:   3'- -GUUGUUGU---UGUUGU---------CGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 307805 0.84 0.957827
Target:  5'- aCGGCggUGACGGCGGUGACGGCAGCGa -3'
miRNA:   3'- -GUUGuuGUUGUUGUCGUUGUUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 277757 0.84 0.957827
Target:  5'- uCAGCAGCucgGCAGCAGUAGCAGCGcggGCAa -3'
miRNA:   3'- -GUUGUUGu--UGUUGUCGUUGUUGU---UGU- -5'
10327 3' -42.2 NC_002687.1 + 283894 0.84 0.95541
Target:  5'- gCAGCAGCAGCGGCuggggcuugugagccAGCAGCGGCGGCu -3'
miRNA:   3'- -GUUGUUGUUGUUG---------------UCGUUGUUGUUGu -5'
10327 3' -42.2 NC_002687.1 + 11511 0.83 0.971672
Target:  5'- gCAGCGGCGGCuAUAGCAGCuGCGACAc -3'
miRNA:   3'- -GUUGUUGUUGuUGUCGUUGuUGUUGU- -5'
10327 3' -42.2 NC_002687.1 + 75799 0.83 0.968569
Target:  5'- uCAACAACAGCGACA-UGACGACGACGc -3'
miRNA:   3'- -GUUGUUGUUGUUGUcGUUGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.